HL_8UVS_050

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVS_050 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3509

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UVS|1|1A|C|2142
8UVS|1|1A|C|2143
8UVS|1|1A|U|2144
8UVS|1|1A|C|2145
8UVS|1|1A|C|2146
8UVS|1|1A|G|2147
8UVS|1|1A|G|2148
8UVS|1|1A|G|2149

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11