3D structure

PDB id
8UVS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
8UVS|1|2A|A|1780, 8UVS|1|2A|C|1781, 8UVS|1|2A|C|1782, 8UVS|1|2A|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UVS_155 not in the Motif Atlas
Homologous match to HL_8VTW_044
Geometric discrepancy: 0.0597
The information below is about HL_8VTW_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.6
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

8UVS|1|2A|U|1777
8UVS|1|2A|U|1778
8UVS|1|2A|U|1779
8UVS|1|2A|A|1780
8UVS|1|2A|C|1781
8UVS|1|2A|C|1782
8UVS|1|2A|A|1783
8UVS|1|2A|A|1784
8UVS|1|2A|A|1785
8UVS|1|2A|A|1786
8UVS|1|2A|A|1787

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2D
50S ribosomal protein L2
Chain 2W
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3943 s