HL_8UVS_176

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UVS|1|2A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVS_176 not in the Motif Atlas

Homologous match to HL_8VTW_065

Geometric discrepancy: 0.083

The information below is about HL_8VTW_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UVS|1|2A|C|2745
8UVS|1|2A|U|2746
8UVS|1|2A|G|2747
8UVS|1|2A|A|2748
8UVS|1|2A|A|2749
8UVS|1|2A|A|2750
8UVS|1|2A|G|2751
8UVS|1|2A|C|2752
8UVS|1|2A|A|2753
8UVS|1|2A|U|2754
8UVS|1|2A|C|2755
8UVS|1|2A|U|2756
8UVS|1|2A|A|2757
8UVS|1|2A|A|2758
8UVS|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13