HL_8UX8_013

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8UX8|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_013 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.0936

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UX8|1|1|G|410
8UX8|1|1|G|411
8UX8|1|1|A|412
8UX8|1|1|C|413
8UX8|1|1|C|414
8UX8|1|1|A|415
8UX8|1|1|U|416
8UX8|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15