HL_8UX8_029

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_029 not in the Motif Atlas

Geometric match to HL_5D8H_002

Geometric discrepancy: 0.3082

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UX8|1|1|C|1092
8UX8|1|1|G|1093
8UX8|1|1|U|1094
8UX8|1|1|A|1095
8UX8|1|1|A|1096
8UX8|1|1|U|1097
8UX8|1|1|A|1098
8UX8|1|1|G|1099

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36