HL_8UX8_039

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

8UX8|1|1|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_039 not in the Motif Atlas

Geometric match to HL_8CRE_039

Geometric discrepancy: 0.093

The information below is about HL_8CRE_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8UX8|1|1|C|1565
8UX8|1|1|A|1566
8UX8|1|1|G|1567
8UX8|1|1|G|1568

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2