HL_8UX8_048

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(PSU)AACUA(PSU)AAC

Length

11 nucleotides

Bulged bases

8UX8|1|1|A|1913

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_048 not in the Motif Atlas

Geometric match to HL_9DFE_046

Geometric discrepancy: 0.2163

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UX8|1|1|G|1910
8UX8|1|1|PSU|1911
8UX8|1|1|A|1912
8UX8|1|1|A|1913
8UX8|1|1|C|1914
8UX8|1|1|U|1915
8UX8|1|1|A|1916
8UX8|1|1|PSU|1917
8UX8|1|1|A|1918
8UX8|1|1|A|1919
8UX8|1|1|C|1920

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA