HL_8UX8_053

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8UX8|1|1|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_053 not in the Motif Atlas

Geometric match to HL_9DFE_051

Geometric discrepancy: 0.1555

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8UX8|1|1|C|2248
8UX8|1|1|U|2249
8UX8|1|1|G|2250
8UX8|1|1|OMG|2251
8UX8|1|1|G|2252
8UX8|1|1|G|2253
8UX8|1|1|C|2254
8UX8|1|1|G|2255
8UX8|1|1|G|2256

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27