HL_8UXA_004

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_004 not in the Motif Atlas

Geometric match to HL_8B0X_040

Geometric discrepancy: 0.1803

The information below is about HL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8UXA|1|A|U|286
8UXA|1|A|G|287
8UXA|1|A|G|288
8UXA|1|A|U|289
8UXA|1|A|G|290
8UXA|1|A|A|291
8UXA|1|A|G|292

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m

Chain S

Large ribosomal subunit protein bL28m