HL_8UXA_016

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAGG

Length

8 nucleotides

Bulged bases

8UXA|1|A|U|884, 8UXA|1|A|G|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_016 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.137

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8UXA|1|A|C|881
8UXA|1|A|G|882
8UXA|1|A|A|883
8UXA|1|A|U|884
8UXA|1|A|A|885
8UXA|1|A|A|886
8UXA|1|A|G|887
8UXA|1|A|G|888

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16m

Chain c

Large ribosomal subunit protein mL60