HL_8UXA_017

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_017 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.1714

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UXA|1|A|G|904
8UXA|1|A|A|905
8UXA|1|A|A|906
8UXA|1|A|A|907
8UXA|1|A|C|908
8UXA|1|A|A|909
8UXA|1|A|G|910
8UXA|1|A|C|911

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL21m

Chain U

Large ribosomal subunit protein uL30m

Chain c

Large ribosomal subunit protein mL60