HL_8UXA_025

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

8UXA|1|A|A|1586

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_025 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.1958

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UXA|1|A|U|1581
8UXA|1|A|A|1582
8UXA|1|A|G|1583
8UXA|1|A|A|1584
8UXA|1|A|G|1585
8UXA|1|A|A|1586
8UXA|1|A|A|1587
8UXA|1|A|U|1588
8UXA|1|A|A|1589

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL29m