HL_8UXA_040

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAACGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_040 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1641

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UXA|1|A|C|2622
8UXA|1|A|A|2623
8UXA|1|A|A|2624
8UXA|1|A|A|2625
8UXA|1|A|C|2626
8UXA|1|A|G|2627
8UXA|1|A|A|2628
8UXA|1|A|G|2629

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m

Chain R

Large ribosomal subunit protein bL27m