HL_8UXA_048
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAGUUUA
- Length
- 8 nucleotides
- Bulged bases
- 8UXA|1|A|U|3020
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UXA_048 not in the Motif Atlas
- Geometric match to HL_3HHN_009
- Geometric discrepancy: 0.1971
- The information below is about HL_3HHN_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8UXA|1|A|U|3019
8UXA|1|A|U|3020
8UXA|1|A|A|3021
8UXA|1|A|G|3022
8UXA|1|A|U|3023
8UXA|1|A|U|3024
8UXA|1|A|U|3025
8UXA|1|A|A|3026
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein uL29m
- Chain d
- Large ribosomal subunit protein mL67
Coloring options: