HL_8UXB_102

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8UXB|1|5|C|17, 8UXB|1|5|U|17|||A, 8UXB|1|5|G|18, 8UXB|1|5|G|19, 8UXB|1|5|U|20, 8UXB|1|5|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXB_102 not in the Motif Atlas

Geometric match to HL_3WQY_001

Geometric discrepancy: 0.2549

The information below is about HL_3WQY_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

8UXB|1|5|C|13
8UXB|1|5|A|14
8UXB|1|5|G|15
8UXB|1|5|C|16
8UXB|1|5|C|17
8UXB|1|5|U|17|||A
8UXB|1|5|G|18
8UXB|1|5|G|19
8UXB|1|5|U|20
8UXB|1|5|A|21
8UXB|1|5|G|22

Current chains

Chain 5

tRNA^ProL (GGG)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA