HL_8UYP_058

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUUUCGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UYP_058 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2674

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8UYP|9|A|G|198
8UYP|9|A|U|199
8UYP|9|A|U|200
8UYP|9|A|U|201
8UYP|9|A|C|202
8UYP|9|A|G|203
8UYP|9|A|U|204
8UYP|9|A|C|205

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains