8UYP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8UYP_001 | 1/A/198:205 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8UYP_002 | 1/A/236:243 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_003 | 1/A/254:259 | GNRA | geometric HL_6N2V_002 HL_37824.7 | |
| HL_8UYP_034 | 2/A/198:205 | T-loop related | geometric HL_3IVK_005 HL_77436.5 | |
| HL_8UYP_035 | 2/A/236:243 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_8UYP_036 | 2/A/254:259 | GNRA | geometric HL_6N2V_002 HL_37824.7 | |
| HL_8UYP_040 | 3/A/198:205 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_041 | 3/A/236:243 | No text annotation | geometric HL_4V9F_055 HL_85367.2 | |
| HL_8UYP_042 | 3/A/254:259 | GNRA | geometric HL_6N2V_002 HL_37824.7 | |
| HL_8UYP_043 | 4/A/198:205 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_044 | 4/A/236:243 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_045 | 4/A/254:259 | GNRA | geometric HL_6N2V_002 HL_37824.7 | |
| HL_8UYP_046 | 5/A/198:205 | No text annotation | ||
| HL_8UYP_047 | 5/A/236:243 | No text annotation | geometric HL_4LX6_002 HL_31585.3 | |
| HL_8UYP_048 | 5/A/254:259 | GNRA | geometric HL_5J7L_190 HL_37824.7 | |
| HL_8UYP_049 | 6/A/198:205 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_050 | 6/A/236:243 | No text annotation | ||
| HL_8UYP_051 | 6/A/254:259 | GNRA | geometric HL_5J7L_190 HL_37824.7 | |
| HL_8UYP_052 | 7/A/198:205 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_053 | 7/A/236:243 | No text annotation | geometric HL_4V88_215 NA | |
| HL_8UYP_054 | 7/A/254:259 | GNRA | geometric HL_7RQB_016 NA | |
| HL_8UYP_055 | 8/A/198:205 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8UYP_056 | 8/A/236:243 | No text annotation | geometric HL_5TBW_054 NA | |
| HL_8UYP_057 | 8/A/254:259 | GNRA | geometric HL_7RQB_016 NA | |
| HL_8UYP_058 | 9/A/198:205 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8UYP_059 | 9/A/236:243 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_8UYP_060 | 9/A/254:259 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_8UYP_004 | 10/A/198:205 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8UYP_005 | 10/A/236:243 | No text annotation | ||
| HL_8UYP_006 | 10/A/254:259 | GNRA | geometric HL_5D5L_001 HL_37824.7 | |
| HL_8UYP_007 | 11/A/198:205 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8UYP_008 | 11/A/236:243 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_009 | 11/A/254:259 | GNRA | geometric HL_7RQB_016 NA | |
| HL_8UYP_010 | 12/A/198:205 | No text annotation | geometric HL_7VTI_001 HL_48417.5 | |
| HL_8UYP_011 | 12/A/236:243 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8UYP_012 | 12/A/254:259 | GNRA | geometric HL_7RQB_016 NA | |
| HL_8UYP_013 | 13/A/198:205 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_014 | 13/A/236:243 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_015 | 13/A/254:259 | GNRA | geometric HL_5D5L_001 HL_37824.7 | |
| HL_8UYP_016 | 14/A/198:205 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_017 | 14/A/236:243 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_018 | 14/A/254:259 | GNRA related | geometric HL_8G9Z_003 HL_04783.2 | |
| HL_8UYP_019 | 15/A/198:205 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_020 | 15/A/236:243 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_021 | 15/A/254:259 | GNRA | geometric HL_5TBW_017 NA | |
| HL_8UYP_022 | 16/A/198:205 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_8UYP_023 | 16/A/236:243 | No text annotation | ||
| HL_8UYP_024 | 16/A/254:259 | GNRA | geometric HL_4QLM_001 HL_37824.7 | |
| HL_8UYP_025 | 17/A/198:205 | No text annotation | ||
| HL_8UYP_026 | 17/A/236:243 | GNRA wlth tandem sheared | geometric HL_1E8O_001 HL_81538.2 | |
| HL_8UYP_027 | 17/A/254:259 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_8UYP_028 | 18/A/198:205 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_8UYP_029 | 18/A/236:243 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
| HL_8UYP_030 | 18/A/254:259 | GNRA | geometric HL_6N2V_002 HL_37824.7 | |
| HL_8UYP_031 | 19/A/198:205 | tRNA anticodon loop | geometric HL_2D6F_005 HL_77436.5 | |
| HL_8UYP_032 | 19/A/236:243 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_81538.2 | |
| HL_8UYP_033 | 19/A/254:259 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_8UYP_037 | 20/A/198:205 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8UYP_038 | 20/A/236:243 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_8UYP_039 | 20/A/254:259 | GNRA | geometric HL_7RQB_016 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8UYP_001 | 1/A/155:156, 1/A/283:287 | Minor groove platform | geometric IL_6DTD_003 IL_51454.2 | |
| IL_8UYP_002 | 1/A/160:162, 1/A/278:279 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_8UYP_003 | 1/A/166:170, 1/A/272:274 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_8UYP_004 | 1/A/172:174, 1/A/269:270 | No text annotation | ||
| IL_8UYP_005 | 1/A/176:178, 1/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_006 | 1/A/184:186, 1/A/223:224 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_8UYP_007 | 1/A/186:187, 1/A/217:223 | No text annotation | ||
| IL_8UYP_008 | 1/A/192:194, 1/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_009 | 1/A/233:235, 1/A/244:245 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8UYP_093 | 2/A/155:156, 2/A/283:287 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_8UYP_094 | 2/A/160:162, 2/A/278:279 | No text annotation | ||
| IL_8UYP_095 | 2/A/166:170, 2/A/272:274 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_8UYP_096 | 2/A/172:174, 2/A/269:270 | Single bulged G | geometric IL_4V9F_010 IL_00225.13 | |
| IL_8UYP_097 | 2/A/176:178, 2/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_098 | 2/A/184:187, 2/A/217:224 | No text annotation | ||
| IL_8UYP_099 | 2/A/192:194, 2/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_100 | 2/A/233:235, 2/A/244:245 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8UYP_110 | 3/A/155:156, 3/A/283:287 | Multiple bulged bases | geometric IL_4YAZ_008 IL_82107.4 | |
| IL_8UYP_111 | 3/A/160:162, 3/A/278:279 | Single bulged A | geometric IL_1CSL_002 IL_31462.5 | |
| IL_8UYP_112 | 3/A/166:170, 3/A/272:274 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_51387.2 | |
| IL_8UYP_113 | 3/A/172:174, 3/A/269:270 | Single bulged G | geometric IL_3DIL_005 IL_00225.13 | |
| IL_8UYP_114 | 3/A/176:178, 3/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_115 | 3/A/184:188, 3/A/216:224 | No text annotation | ||
| IL_8UYP_166 | 3/A/192:194, 3/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_117 | 3/A/233:235, 3/A/244:245 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8UYP_118 | 4/A/155:156, 4/A/283:287 | Major groove intercalation | geometric IL_5TBW_085 NA | |
| IL_8UYP_119 | 4/A/160:162, 4/A/278:279 | Single bulged A | geometric IL_2VPL_002 IL_31462.5 | |
| IL_8UYP_120 | 4/A/166:170, 4/A/272:274 | No text annotation | ||
| IL_8UYP_121 | 4/A/172:174, 4/A/269:270 | No text annotation | ||
| IL_8UYP_122 | 4/A/176:178, 4/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_8UYP_123 | 4/A/184:187, 4/A/217:224 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_8UYP_124 | 4/A/192:194, 4/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_125 | 4/A/233:235, 4/A/244:245 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8UYP_126 | 5/A/155:156, 5/A/283:287 | No text annotation | geometric IL_5TBW_503 NA | |
| IL_8UYP_127 | 5/A/160:162, 5/A/278:279 | Single bulged A | geometric IL_2QUX_002 IL_31462.5 | |
| IL_8UYP_128 | 5/A/166:170, 5/A/272:274 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8UYP_129 | 5/A/172:174, 5/A/269:270 | No text annotation | ||
| IL_8UYP_130 | 5/A/176:178, 5/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_8UYP_131 | 5/A/184:187, 5/A/217:224 | No text annotation | ||
| IL_8UYP_132 | 5/A/192:194, 5/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_133 | 5/A/233:235, 5/A/244:245 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_8UYP_134 | 6/A/155:156, 6/A/283:287 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_8UYP_135 | 6/A/160:162, 6/A/278:279 | No text annotation | ||
| IL_8UYP_136 | 6/A/166:170, 6/A/272:274 | Major groove platform with extra cWW | geometric IL_4V9F_028 IL_51387.2 | |
| IL_8UYP_137 | 6/A/172:174, 6/A/269:270 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_8UYP_138 | 6/A/176:178, 6/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_139 | 6/A/184:187, 6/A/217:224 | No text annotation | ||
| IL_8UYP_140 | 6/A/192:194, 6/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_141 | 6/A/233:235, 6/A/244:245 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_8UYP_142 | 7/A/155:156, 7/A/283:287 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
| IL_8UYP_143 | 7/A/160:162, 7/A/278:279 | No text annotation | ||
| IL_8UYP_144 | 7/A/166:170, 7/A/272:274 | No text annotation | ||
| IL_8UYP_145 | 7/A/172:174, 7/A/269:270 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_8UYP_146 | 7/A/176:178, 7/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_8UYP_147 | 7/A/184:187, 7/A/217:224 | No text annotation | ||
| IL_8UYP_148 | 7/A/192:194, 7/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_149 | 7/A/233:235, 7/A/244:245 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_8UYP_150 | 8/A/155:156, 8/A/283:287 | Major groove platform | geometric IL_7A0S_088 IL_07039.3 | |
| IL_8UYP_151 | 8/A/160:162, 8/A/278:279 | Single bulged A | geometric IL_2VPL_002 IL_31462.5 | |
| IL_8UYP_152 | 8/A/166:170, 8/A/272:274 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_8UYP_153 | 8/A/172:174, 8/A/269:270 | No text annotation | ||
| IL_8UYP_154 | 8/A/176:178, 8/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_8UYP_155 | 8/A/184:187, 8/A/217:224 | No text annotation | ||
| IL_8UYP_173 | 8/A/192:194, 8/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_156 | 8/A/192:195, 8/A/208:212 | No text annotation | geometric IL_4DB2_001 IL_68909.1 | |
| IL_8UYP_157 | 8/A/233:235, 8/A/244:245 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8UYP_158 | 9/A/155:156, 9/A/283:287 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_8UYP_159 | 9/A/160:162, 9/A/278:279 | Single bulged A | geometric IL_2QUX_002 IL_31462.5 | |
| IL_8UYP_160 | 9/A/166:170, 9/A/272:274 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_8UYP_161 | 9/A/172:174, 9/A/269:270 | No text annotation | ||
| IL_8UYP_162 | 9/A/176:178, 9/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_163 | 9/A/184:187, 9/A/217:224 | No text annotation | ||
| IL_8UYP_164 | 9/A/192:194, 9/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_165 | 9/A/233:235, 9/A/244:245 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_8UYP_010 | 10/A/155:156, 10/A/283:287 | Single bulged A | geometric IL_5J7L_064 IL_31462.5 | |
| IL_8UYP_011 | 10/A/160:162, 10/A/278:279 | No text annotation | ||
| IL_8UYP_012 | 10/A/166:170, 10/A/272:274 | Isolated basepair with bulged bases | geometric IL_1XJR_001 IL_49061.1 | |
| IL_8UYP_013 | 10/A/172:174, 10/A/269:270 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_8UYP_014 | 10/A/176:178, 10/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_015 | 10/A/184:187, 10/A/217:224 | No text annotation | ||
| IL_8UYP_016 | 10/A/192:194, 10/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_017 | 10/A/233:235, 10/A/244:245 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_8UYP_018 | 11/A/156:157, 11/A/282:286 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_8UYP_019 | 11/A/159:161, 11/A/279:280 | No text annotation | ||
| IL_8UYP_020 | 11/A/166:170, 11/A/272:274 | No text annotation | ||
| IL_8UYP_021 | 11/A/172:174, 11/A/269:270 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8UYP_022 | 11/A/176:178, 11/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_023 | 11/A/184:188, 11/A/216:224 | No text annotation | ||
| IL_8UYP_024 | 11/A/192:195, 11/A/208:212 | No text annotation | geometric IL_4DB2_001 IL_68909.1 | |
| IL_8UYP_025 | 11/A/233:235, 11/A/244:245 | Major groove platform | geometric IL_5J7L_028 IL_48076.6 | |
| IL_8UYP_026 | 12/A/156:157, 12/A/282:286 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_8UYP_167 | 12/A/159:161, 12/A/279:280 | No text annotation | ||
| IL_8UYP_028 | 12/A/166:170, 12/A/272:274 | No text annotation | ||
| IL_8UYP_029 | 12/A/172:174, 12/A/269:270 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8UYP_030 | 12/A/176:178, 12/A/265:267 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_8UYP_031 | 12/A/184:187, 12/A/217:224 | No text annotation | ||
| IL_8UYP_168 | 12/A/192:194, 12/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_033 | 12/A/233:235, 12/A/244:245 | Major groove platform | geometric IL_5J7L_028 IL_48076.6 | |
| IL_8UYP_169 | 13/A/156:157, 13/A/282:286 | No text annotation | geometric IL_8C3A_483 NA | |
| IL_8UYP_035 | 13/A/159:161, 13/A/279:280 | No text annotation | ||
| IL_8UYP_036 | 13/A/166:170, 13/A/272:274 | No text annotation | ||
| IL_8UYP_037 | 13/A/172:174, 13/A/269:270 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8UYP_038 | 13/A/176:178, 13/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_039 | 13/A/184:187, 13/A/217:224 | No text annotation | ||
| IL_8UYP_170 | 13/A/192:194, 13/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_041 | 13/A/233:235, 13/A/244:245 | Single bulged A | geometric IL_1JZV_002 IL_31462.5 | |
| IL_8UYP_042 | 14/A/156:157, 14/A/282:286 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
| IL_8UYP_043 | 14/A/159:161, 14/A/279:280 | No text annotation | ||
| IL_8UYP_044 | 14/A/166:170, 14/A/272:274 | No text annotation | geometric IL_2OEU_001 IL_46387.1 | |
| IL_8UYP_045 | 14/A/172:174, 14/A/269:270 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8UYP_046 | 14/A/176:178, 14/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_047 | 14/A/184:187, 14/A/217:224 | No text annotation | ||
| IL_8UYP_048 | 14/A/192:194, 14/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_049 | 14/A/233:235, 14/A/244:245 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_8UYP_050 | 15/A/156:157, 15/A/282:286 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
| IL_8UYP_051 | 15/A/159:161, 15/A/279:280 | Single bulged A | geometric IL_5AOX_002 IL_31462.5 | |
| IL_8UYP_052 | 15/A/166:170, 15/A/272:274 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_8UYP_053 | 15/A/172:174, 15/A/269:270 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8UYP_054 | 15/A/176:178, 15/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_055 | 15/A/184:186, 15/A/223:224 | Single bulged C | geometric IL_3DIL_001 IL_61258.15 | |
| IL_8UYP_056 | 15/A/186:187, 15/A/217:223 | Multiple bulged bases | geometric IL_4YAZ_007 IL_82107.4 | |
| IL_8UYP_057 | 15/A/192:194, 15/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_058 | 15/A/233:235, 15/A/244:245 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_8UYP_171 | 16/A/157:158, 16/A/281:285 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_68140.4 | |
| IL_8UYP_060 | 16/A/159:161, 16/A/279:280 | Single bulged A | geometric IL_1JZV_002 IL_31462.5 | |
| IL_8UYP_061 | 16/A/166:170, 16/A/272:274 | 8-nt loop receptor | geometric IL_6CK5_002 IL_36516.3 | |
| IL_8UYP_062 | 16/A/172:174, 16/A/269:270 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8UYP_063 | 16/A/176:178, 16/A/265:267 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_8UYP_064 | 16/A/184:187, 16/A/217:224 | No text annotation | ||
| IL_8UYP_065 | 16/A/192:194, 16/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_066 | 16/A/233:235, 16/A/244:245 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_8UYP_067 | 17/A/156:157, 17/A/282:286 | Major groove platform | geometric IL_7A0S_088 IL_07039.3 | |
| IL_8UYP_068 | 17/A/159:161, 17/A/279:280 | Single bulged A | geometric IL_4P3U_011 IL_31462.5 | |
| IL_8UYP_069 | 17/A/166:170, 17/A/272:274 | No text annotation | geometric IL_4LFB_066 NA | |
| IL_8UYP_070 | 17/A/172:174, 17/A/269:270 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8UYP_071 | 17/A/176:178, 17/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_072 | 17/A/184:187, 17/A/217:224 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8UYP_073 | 17/A/192:194, 17/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_074 | 17/A/233:235, 17/A/244:245 | Major groove platform | geometric IL_5J7L_028 IL_48076.6 | |
| IL_8UYP_075 | 18/A/156:157, 18/A/282:286 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_8UYP_076 | 18/A/159:161, 18/A/279:280 | Single bulged A | geometric IL_6CZR_114 NA | |
| IL_8UYP_077 | 18/A/166:170, 18/A/272:274 | No text annotation | ||
| IL_8UYP_078 | 18/A/172:174, 18/A/269:270 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8UYP_079 | 18/A/176:178, 18/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_080 | 18/A/184:186, 18/A/223:224 | No text annotation | ||
| IL_8UYP_081 | 18/A/186:187, 18/A/217:223 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_8UYP_082 | 18/A/192:194, 18/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_083 | 18/A/233:235, 18/A/244:245 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_8UYP_084 | 19/A/156:157, 19/A/282:286 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_8UYP_085 | 19/A/159:161, 19/A/279:280 | No text annotation | ||
| IL_8UYP_086 | 19/A/166:170, 19/A/272:274 | No text annotation | geometric IL_2OEU_001 IL_46387.1 | |
| IL_8UYP_087 | 19/A/172:174, 19/A/269:270 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8UYP_088 | 19/A/176:178, 19/A/265:267 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_8UYP_089 | 19/A/184:186, 19/A/223:224 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
| IL_8UYP_090 | 19/A/186:187, 19/A/217:223 | Multiple bulged bases | geometric IL_4YAZ_007 IL_82107.4 | |
| IL_8UYP_091 | 19/A/192:195, 19/A/208:212 | No text annotation | geometric IL_5J7L_059 IL_65718.4 | |
| IL_8UYP_092 | 19/A/233:235, 19/A/244:245 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_8UYP_101 | 20/A/156:157, 20/A/282:286 | Major groove platform | geometric IL_4WF9_094 IL_07039.3 | |
| IL_8UYP_102 | 20/A/159:161, 20/A/279:280 | Minor groove platform | geometric IL_4LFB_038 IL_51454.2 | |
| IL_8UYP_103 | 20/A/166:170, 20/A/272:274 | No text annotation | geometric IL_2OEU_001 IL_46387.1 | |
| IL_8UYP_104 | 20/A/172:174, 20/A/269:270 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8UYP_105 | 20/A/176:178, 20/A/265:267 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_8UYP_106 | 20/A/184:186, 20/A/223:224 | No text annotation | ||
| IL_8UYP_172 | 20/A/184:187, 20/A/217:224 | No text annotation | ||
| IL_8UYP_107 | 20/A/186:187, 20/A/217:223 | No text annotation | ||
| IL_8UYP_108 | 20/A/192:194, 20/A/209:212 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8UYP_109 | 20/A/233:235, 20/A/244:245 | Minor groove platform | geometric IL_4V88_388 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UYP_116 | No text annotation | ||
| IL_8UYP_027 | Other IL | ||
| IL_8UYP_032 | No text annotation | ||
| IL_8UYP_034 | No text annotation | ||
| IL_8UYP_040 | No text annotation | ||
| IL_8UYP_059 | Major groove platform with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_8UYP_001 | 1/A/181:182, 1/A/226:227, 1/A/251:252, 1/A/261:262 | No text annotation | ||
| J4_8UYP_002 | 2/A/181:182, 2/A/226:227, 2/A/251:252, 2/A/261:262 | No text annotation | ||
| J4_8UYP_003 | 3/A/181:182, 3/A/226:227, 3/A/251:252, 3/A/261:262 | No text annotation | ||
| J4_8UYP_004 | 4/A/181:182, 4/A/226:227, 4/A/251:252, 4/A/261:262 | No text annotation | ||
| J4_8UYP_005 | 5/A/181:182, 5/A/226:227, 5/A/251:252, 5/A/261:262 | No text annotation | ||
| J4_8UYP_006 | 6/A/181:182, 6/A/226:227, 6/A/251:252, 6/A/261:262 | No text annotation | ||
| J4_8UYP_007 | 7/A/181:182, 7/A/226:227, 7/A/251:252, 7/A/261:262 | No text annotation | ||
| J4_8UYP_008 | 8/A/181:182, 8/A/226:227, 8/A/251:252, 8/A/261:262 | No text annotation | ||
| J4_8UYP_009 | 9/A/181:182, 9/A/226:227, 9/A/251:252, 9/A/261:262 | No text annotation | ||
| J4_8UYP_010 | 10/A/181:182, 10/A/226:227, 10/A/251:252, 10/A/261:262 | No text annotation | ||
| J4_8UYP_011 | 11/A/181:182, 11/A/226:227, 11/A/251:252, 11/A/261:262 | No text annotation | ||
| J4_8UYP_012 | 12/A/181:182, 12/A/226:227, 12/A/251:252, 12/A/261:262 | No text annotation | ||
| J4_8UYP_013 | 13/A/181:182, 13/A/226:227, 13/A/251:252, 13/A/261:262 | No text annotation | ||
| J4_8UYP_014 | 14/A/181:182, 14/A/226:227, 14/A/251:252, 14/A/261:262 | No text annotation | ||
| J4_8UYP_015 | 15/A/181:182, 15/A/226:227, 15/A/251:252, 15/A/261:262 | No text annotation | ||
| J4_8UYP_016 | 16/A/181:182, 16/A/226:227, 16/A/251:252, 16/A/261:262 | No text annotation | ||
| J4_8UYP_017 | 17/A/181:182, 17/A/226:227, 17/A/251:252, 17/A/261:262 | No text annotation | ||
| J4_8UYP_018 | 18/A/181:182, 18/A/226:227, 18/A/251:252, 18/A/261:262 | No text annotation | ||
| J4_8UYP_019 | 19/A/181:182, 19/A/226:227, 19/A/251:252, 19/A/261:262 | No text annotation | ||
| J4_8UYP_020 | 20/A/181:182, 20/A/226:227, 20/A/251:252, 20/A/261:262 | No text annotation |
Problematic loops
No problematic loops
Coloring options: