HL_8UZ3_025

3D structure

PDB id

8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8UZ3|1|1|U|958, 8UZ3|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UZ3_025 not in the Motif Atlas

Geometric match to HL_6WPI_001

Geometric discrepancy: 0.179

The information below is about HL_6WPI_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UZ3|1|1|U|955
8UZ3|1|1|G|956
8UZ3|1|1|C|957
8UZ3|1|1|U|958
8UZ3|1|1|A|959
8UZ3|1|1|A|960
8UZ3|1|1|C|961
8UZ3|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16