Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8UZ3_0011/1/59:68No text annotation
geometric
HL_5J7L_134
NA
HL_8UZ3_0021/1/87:95No text annotation
geometric
HL_5J7L_135
NA
HL_8UZ3_0031/1/123:128No text annotation
geometric
HL_9DFE_003
HL_82710.3
HL_8UZ3_0051/1/158:168No text annotation
geometric
HL_5J7L_138
NA
HL_8UZ3_0061/1/194:201No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_8UZ3_0071/1/225:230No text annotation
geometric
HL_7EL1_002
HL_19413.1
HL_8UZ3_0081/1/246:252No text annotation
geometric
HL_9DFE_007
HL_76371.1
HL_8UZ3_0091/1/305:312T-loop with 1 bulged base
geometric
HL_7A0S_010
HL_13999.1
HL_8UZ3_0101/1/327:335T-loop with unstacked turn
geometric
HL_5J7L_144
NA
HL_8UZ3_0111/1/382:392No text annotation
geometric
HL_5J7L_145
NA
HL_8UZ3_0121/1/410:417Pseudoknot geometry
geometric
HL_7A0S_014
HL_30680.4
HL_8UZ3_0131/1/462:467GNRA
geometric
HL_8CRE_218
HL_34789.1
HL_8UZ3_0141/1/487:493GNRA
geometric
HL_5J7L_148
NA
HL_8UZ3_0161/1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_8UZ3_0171/1/611:617No text annotation
geometric
HL_5J7L_151
NA
HL_8UZ3_0181/1/629:634GNRA
geometric
HL_8P9A_213
HL_34789.1
HL_8UZ3_0191/1/641:647No text annotation
geometric
HL_5J7L_153
NA
HL_8UZ3_0201/1/712:719GNRA wlth tandem sheared
geometric
HL_5J7L_154
NA
HL_8UZ3_0211/1/744:753No text annotation
geometric
HL_7A0S_022
HL_50204.1
HL_8UZ3_0221/1/779:785UNCG variation
geometric
HL_7A0S_023
HL_51020.1
HL_8UZ3_0231/1/826:831No text annotation
geometric
HL_9DFE_023
HL_27530.1
HL_8UZ3_0251/1/955:962GNRA
geometric
HL_6WPI_001
HL_34789.1
HL_8UZ3_0261/1/978:985No text annotation
geometric
HL_4WF9_028
HL_47171.1
HL_8UZ3_0301/1/1222:1227GNRA
geometric
HL_7A0S_031
HL_34789.1
HL_8UZ3_0311/1/1281:1289T-loop with 2 stacked bulged bases
geometric
HL_8CRE_030
NA
HL_8UZ3_0321/1/1324:1330Pseudoknot geometry with 3' bulge
geometric
HL_4V9F_035
HL_49081.1
HL_8UZ3_0331/1/1363:1368GNRA
geometric
HL_5J7L_167
NA
HL_8UZ3_0341/1/1389:1398No text annotation
geometric
HL_5J7L_168
NA
HL_8UZ3_0351/1/1451:1459No text annotation
HL_8UZ3_0361/1/1492:1498Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
NA
HL_8UZ3_0381/1/1565:1568Mini UNCG
geometric
HL_7A0S_039
HL_90436.1
HL_8UZ3_0391/1/1612:1619No text annotation
geometric
HL_7A0S_040
HL_28592.1
HL_8UZ3_0401/1/1630:1636GNRA
geometric
HL_5J7L_174
NA
HL_8UZ3_0411/1/1691:1696UNCG
geometric
HL_9FN3_001
NA
HL_8UZ3_0421/1/1727:1733UNCG variation
geometric
HL_7A0S_023
HL_51020.1
HL_8UZ3_0431/1/1752:1756No text annotation
geometric
HL_4V9F_046
HL_80709.4
HL_8UZ3_0441/1/1777:1787No text annotation
geometric
HL_4WF9_043
HL_87681.1
HL_8UZ3_0451/1/1806:1811GNRA related
geometric
HL_3OXE_002
HL_37569.1
HL_8UZ3_0461/1/1868:1873GNRA
geometric
HL_1G1X_003
NA
HL_8UZ3_0481/1/1949:1957No text annotation
geometric
HL_4WF9_046
HL_61418.1
HL_8UZ3_0491/1/2027:2036No text annotation
geometric
HL_5J7L_183
NA
HL_8UZ3_0511/1/2209:2215No text annotation
geometric
HL_5J7L_185
NA
HL_8UZ3_0521/1/2248:2256No text annotation
geometric
HL_7A0S_052
HL_11974.1
HL_8UZ3_0531/1/2264:2276No text annotation
geometric
HL_5J7L_187
NA
HL_8UZ3_0541/1/2304:2312No text annotation
geometric
HL_5J7L_219
NA
HL_8UZ3_0551/1/2324:2331Pseudoknot geometry
geometric
HL_5J7L_189
NA
HL_8UZ3_0561/1/2356:2361GNRA
geometric
HL_5J7L_190
NA
HL_8UZ3_0571/1/2374:2379GNRA
geometric
HL_4WF9_060
HL_34789.1
HL_8UZ3_0581/1/2404:2413No text annotation
geometric
HL_5J7L_192
NA
HL_8UZ3_0591/1/2471:2479No text annotation
geometric
HL_7A0S_059
HL_52011.1
HL_8UZ3_0601/1/2528:2535GNRA variation
geometric
HL_5J7L_194
NA
HL_8UZ3_0611/1/2551:2557No text annotation
geometric
HL_5J7L_195
NA
HL_8UZ3_0621/1/2594:2599GNRA
geometric
HL_7A0S_068
HL_34789.1
HL_8UZ3_0631/1/2658:2663GNRA
geometric
HL_1U6B_001
HL_34789.1
HL_8UZ3_0641/1/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
NA
HL_8UZ3_0651/1/2745:2759No text annotation
geometric
HL_9DFE_064
HL_53269.1
HL_8UZ3_0671/1/2819:2827No text annotation
geometric
HL_5J7L_201
NA
HL_8UZ3_0681/1/2856:2861GNRA
geometric
HL_7UQ6_002
NA
HL_8UZ3_0691/2/12:22No text annotation
geometric
HL_8CRE_191
HL_31940.1
HL_8UZ3_0761/2/320:333No text annotation
geometric
HL_4LFB_008
HL_39665.1
HL_8UZ3_0771/2/342:347UNCG
geometric
HL_4LFB_011
HL_61337.1
HL_8UZ3_0801/2/462:470GNRA with extra cWW
geometric
HL_4WF9_039
HL_45359.1
HL_8UZ3_0831/2/689:698No text annotation
geometric
HL_5J7L_015
NA
HL_8UZ3_0841/2/726:731GNRA
geometric
HL_1G1X_003
NA
HL_8UZ3_0851/2/786:796No text annotation
geometric
HL_4LFB_017
HL_38491.1
HL_8UZ3_0871/2/862:867GNRA
geometric
HL_8P9A_159
HL_34789.1
HL_8UZ3_0881/2/897:902GNRA
geometric
HL_8CRE_215
HL_34789.1
HL_8UZ3_0891/2/963:972No text annotation
HL_8UZ3_0911/2/1076:1081GNRA
geometric
HL_4WF9_065
HL_34789.1
HL_8UZ3_0921/2/1089:1096No text annotation
HL_8UZ3_0971/2/1356:1366No text annotation
geometric
HL_4LFB_030
HL_86432.1
HL_8UZ3_0991/2/1515:1520GNRA
geometric
HL_4WF9_031
HL_34789.1
HL_8UZ3_1001/3/34:48No text annotation
geometric
HL_1MJI_004
HL_97756.3
HL_8UZ3_1011/3/86:90Mini UNCG
geometric
HL_5J7L_204
NA
HL_8UZ3_1021/5/13:22tRNA D-loop
geometric
HL_7UQ6_001
NA
HL_8UZ3_1031/5/31:39tRNA anticodon loop
geometric
HL_4TUE_034
NA
HL_8UZ3_1041/5/53:61T-loop with 2 stacked bulged bases
geometric
HL_4WT8_217
NA

Problematic loops

#loop idProblemSequence
HL_8UZ3_004No text annotation
HL_8UZ3_015No text annotation
HL_8UZ3_024No text annotation
HL_8UZ3_027No text annotation
HL_8UZ3_028GNRA wlth tandem sheared
HL_8UZ3_029No text annotation
HL_8UZ3_037No text annotation
HL_8UZ3_047No text annotation
HL_8UZ3_050UNCG
HL_8UZ3_066No text annotation
HL_8UZ3_070No text annotation
HL_8UZ3_071GNRA
HL_8UZ3_072GNRA
HL_8UZ3_073No text annotation
HL_8UZ3_074GNRA related
HL_8UZ3_075GNRA
HL_8UZ3_078GNRA
HL_8UZ3_079UNCG
HL_8UZ3_081GNRA variation
HL_8UZ3_082GNRA-like with tWH
HL_8UZ3_086No text annotation
HL_8UZ3_090GNRA
HL_8UZ3_093No text annotation
HL_8UZ3_094No text annotation
HL_8UZ3_095GNRA
HL_8UZ3_096T-loop with 3 stacked bulged bases
HL_8UZ3_098UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8UZ3_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_8UZ3_0021/1/36:37,
1/1/442:444
Single bulged A
geometric
IL_5J7L_246
NA
IL_8UZ3_0031/1/43:44,
1/1/434:436
Minor groove platform
geometric
IL_7A0S_003
IL_34520.1
IL_8UZ3_0041/1/81:85,
1/1/97:105
No text annotation
geometric
IL_5J7L_248
NA
IL_8UZ3_0051/1/183:184,
1/1/212:214
Single stack bend
geometric
IL_7MLX_001
NA
IL_8UZ3_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_62167.1
IL_8UZ3_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
NA
IL_8UZ3_0081/1/269:271,
1/1/366:370
No text annotation
geometric
IL_5J7L_252
NA
IL_8UZ3_0101/1/293:295,
1/1/343:347
No text annotation
geometric
IL_5J7L_254
NA
IL_8UZ3_0111/1/536:539,
1/1/554:557
Double sheared
geometric
IL_5J7L_256
NA
IL_8UZ3_0121/1/564:566,
1/1/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.1
IL_8UZ3_0131/1/606:610,
1/1/618:622
AAA cross-strand stack
geometric
IL_5J7L_258
NA
IL_8UZ3_0141/1/672:674,
1/1/806:808
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_8UZ3_0151/1/674:678,
1/1/799:806
tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_8UZ3_0161/1/697:698,
1/1/763:765
Single bulged A
geometric
IL_5J7L_261
NA
IL_8UZ3_0171/1/702:703,
1/1/728:730
Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_8UZ3_0181/1/703:707,
1/1/724:728
Triple sheared
geometric
IL_4WF9_024
IL_15190.1
IL_8UZ3_0191/1/738:740,
1/1/757:758
Major groove platform
geometric
IL_5J7L_264
NA
IL_8UZ3_0201/1/775:777,
1/1/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_8UZ3_0211/1/837:838,
1/1/940:942
Single stack bend
geometric
IL_7A0S_022
IL_15011.1
IL_8UZ3_0221/1/844:847,
1/1/933:934
90 degree turn
geometric
IL_5J7L_267
NA
IL_8UZ3_0231/1/847:848,
1/1/930:933
Multiple bulged bases
geometric
IL_1R3E_001
IL_44609.1
IL_8UZ3_0241/1/850:851,
1/1/926:928
Single stack bend
geometric
IL_5J7L_269
NA
IL_8UZ3_0251/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_8UZ3_0261/1/862:863,
1/1/913:915
Single bulged G
geometric
IL_5J7L_271
NA
IL_8UZ3_0271/1/864:868,
1/1/909:912
C-loop with bulged stacked A's
geometric
IL_5J7L_272
NA
IL_8UZ3_0281/1/870:872,
1/1/905:907
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_8UZ3_0291/1/875:879,
1/1/898:902
Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_87767.1
IL_8UZ3_0311/1/994:996,
1/1/1159:1160
Single bulged C
geometric
IL_7A0S_032
IL_05642.1
IL_8UZ3_0321/1/998:1002,
1/1/1153:1157
UAA/GAN
geometric
IL_4WF9_036
IL_08938.1
IL_8UZ3_0331/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_8UZ3_0341/1/1011:1013,
1/1/1149:1150
Single bulged U
geometric
IL_5J7L_279
NA
IL_8UZ3_0351/1/1018:1024,
1/1/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_8UZ3_0361/1/1024:1030,
1/1/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_8UZ3_0371/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW pair
geometric
IL_6TFF_003
IL_30229.1
IL_8UZ3_0381/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_8UZ3_0411/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
geometric
IL_5J7L_286
NA
IL_8UZ3_0421/1/1202:1206,
1/1/1240:1243
No text annotation
geometric
IL_5J7L_287
NA
IL_8UZ3_0431/1/1208:1215,
1/1/1234:1238
Kink-turn
geometric
IL_7EAG_003
IL_90775.1
IL_8UZ3_0441/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
NA
IL_8UZ3_0451/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_74641.1
IL_8UZ3_0461/1/1319:1323,
1/1/1331:1333
C-loop
geometric
IL_5J7L_291
NA
IL_8UZ3_0471/1/1351:1355,
1/1/1376:1380
UAA/GAN
geometric
IL_5J7L_292
NA
IL_8UZ3_0481/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
geometric
IL_5J7L_293
NA
IL_8UZ3_0501/1/1417:1421,
1/1/1577:1581
UAA/GAN
geometric
IL_7A0S_033
IL_08938.1
IL_8UZ3_0511/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
NA
IL_8UZ3_0521/1/1437:1440,
1/1/1551:1555
tSH-tHW
geometric
IL_5J7L_297
NA
IL_8UZ3_0531/1/1450:1451,
1/1/1459:1461
Single bulged U
geometric
IL_2A64_003
NA
IL_8UZ3_0541/1/1468:1471,
1/1/1520:1524
No text annotation
geometric
IL_5J7L_299
NA
IL_8UZ3_0551/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
geometric
IL_5J7L_300
NA
IL_8UZ3_0561/1/1481:1482,
1/1/1507:1510
180 degree turn
geometric
IL_5J7L_301
NA
IL_8UZ3_0571/1/1489:1491,
1/1/1499:1500
Single bulged A
geometric
IL_4V9F_098
IL_14190.1
IL_8UZ3_0581/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
geometric
IL_5J7L_303
NA
IL_8UZ3_0591/1/1651:1656,
1/1/2004:2006
No text annotation
geometric
IL_5J7L_304
NA
IL_8UZ3_0601/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
geometric
IL_4WF9_063
IL_10432.1
IL_8UZ3_0611/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
geometric
IL_7A0S_061
IL_74641.1
IL_8UZ3_0621/1/1666:1674,
1/1/1990:1994
No text annotation
geometric
IL_8P9A_305
IL_80252.1
IL_8UZ3_0631/1/1669:1674,
1/1/1990:1993
No text annotation
geometric
IL_8P9A_306
IL_28217.1
IL_8UZ3_0641/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_7A0S_063
IL_20700.1
IL_8UZ3_0651/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
NA
IL_8UZ3_0661/1/1720:1724,
1/1/1736:1740
Triple sheared
geometric
IL_5J7L_310
NA
IL_8UZ3_0671/1/1770:1771,
1/1/1980:1982
Single bulged A
geometric
IL_4WF9_068
IL_14190.1
IL_8UZ3_0681/1/1798:1804,
1/1/1813:1821
Kink-turn related
geometric
IL_7A0S_065
IL_17069.6
IL_8UZ3_0691/1/1837:1842,
1/1/1898:1903
No text annotation
IL_8UZ3_0701/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
NA
IL_8UZ3_0711/1/1851:1860,
1/1/1882:1891
No text annotation
geometric
IL_5J7L_387
NA
IL_8UZ3_0721/1/1864:1867,
1/1/1874:1878
UAA/GAN related
geometric
IL_5J7L_317
NA
IL_8UZ3_0731/1/1933:1934,
1/1/1964:1967
Bulged stacked bases
geometric
IL_7A0S_071
IL_24886.1
IL_8UZ3_0741/1/1934:1945,
1/1/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_8UZ3_0751/1/2050:2052,
1/1/2617:2618
Major groove platform
geometric
IL_5J7L_320
NA
IL_8UZ3_0761/1/2054:2056,
1/1/2612:2615
No text annotation
geometric
IL_4WF9_079
IL_80025.1
IL_8UZ3_0771/1/2067:2069,
1/1/2442:2443
Single bulged U
geometric
IL_5J7L_388
NA
IL_8UZ3_0781/1/2070:2071,
1/1/2438:2441
Minor groove platform
geometric
IL_9DFE_081
IL_34520.1
IL_8UZ3_0791/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
geometric
IL_5J7L_325
NA
IL_8UZ3_0801/1/2085:2087,
1/1/2232:2234
Isolated non-canonical cWW pair
geometric
IL_7A0S_078
IL_71625.1
IL_8UZ3_0841/1/2202:2204,
1/1/2220:2221
Single bulged U
geometric
IL_5J7L_331
NA
IL_8UZ3_0851/1/2350:2353,
1/1/2364:2367
Double sheared
geometric
IL_3D0U_002
IL_58355.1
IL_8UZ3_0861/1/2401:2403,
1/1/2414:2415
No text annotation
geometric
IL_8CRE_056
NA
IL_8UZ3_0871/1/2453:2455,
1/1/2496:2500
No text annotation
IL_8UZ3_0881/1/2457:2459,
1/1/2493:2494
Major groove platform
geometric
IL_9DFE_093
IL_48076.7
IL_8UZ3_0891/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_8UZ3_0901/1/2466:2470,
1/1/2480:2484
Double sheared with non-canonical cWW
geometric
IL_7A0S_087
IL_87767.1
IL_8UZ3_0911/1/2507:2508,
1/1/2580:2582
No text annotation
geometric
IL_8P9A_334
IL_46637.1
IL_8UZ3_0921/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_8UZ3_0931/1/2512:2513,
1/1/2571:2574
No text annotation
geometric
IL_4WF9_096
IL_44609.1
IL_8UZ3_0941/1/2522:2523,
1/1/2540:2543
Major groove platform with intercalation
geometric
IL_5J7L_342
NA
IL_8UZ3_0951/1/2591:2592,
1/1/2601:2603
Single bulged A
geometric
IL_8P9A_399
IL_14190.1
IL_8UZ3_0961/1/2636:2640,
1/1/2774:2782
tSH-tHS-tHW
geometric
IL_5J7L_345
NA
IL_8UZ3_0971/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.5
IL_8UZ3_0981/1/2680:2684,
1/1/2725:2727
C-loop
geometric
IL_7A0S_095
IL_63596.12
IL_8UZ3_0991/1/2687:2691,
1/1/2718:2722
UAA/GAN related, with intercalation
geometric
IL_4WF9_102
IL_82016.1
IL_8UZ3_1001/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
geometric
IL_5J7L_349
NA
IL_8UZ3_1011/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8UZ3_1021/1/2806:2811,
1/1/2889:2892
No text annotation
geometric
IL_5J7L_351
NA
IL_8UZ3_1031/1/2838:2839,
1/1/2878:2880
No text annotation
geometric
IL_9FN3_002
NA
IL_8UZ3_1041/1/2841:2846,
1/1/2870:2876
No text annotation
IL_8UZ3_1051/1/2847:2852,
1/1/2865:2869
tHS double platform
geometric
IL_5J7L_354
NA
IL_8UZ3_1061/2/30:32,
1/2/552:553
Single bulged G
geometric
IL_5J7L_001
NA
IL_8UZ3_1071/2/44:45,
1/2/396:398
Single bulged A
geometric
IL_4LFB_002
IL_14190.1
IL_8UZ3_1081/2/54:56,
1/2/356:357
Minor groove platform
geometric
IL_8CRE_394
IL_34520.1
IL_8UZ3_1121/2/128:131,
1/2/231:233
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_8UZ3_1131/2/132:136,
1/2/227:230
Minor groove platform related
geometric
IL_5J7L_010
NA
IL_8UZ3_1161/2/242:247,
1/2/277:284
Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
NA
IL_8UZ3_1171/2/249:252,
1/2/274:275
No text annotation
geometric
IL_4V9F_016
IL_22002.1
IL_8UZ3_1181/2/292:293,
1/2/304:308
C-loop
geometric
IL_4LFB_013
IL_06671.1
IL_8UZ3_1191/2/367:369,
1/2/392:393
Single bulged U
geometric
IL_5J7L_279
NA
IL_8UZ3_1201/2/371:375,
1/2/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_8UZ3_1251/2/504:511,
1/2/540:541
SSU/LSU pseudoknot
geometric
IL_8CRE_421
IL_11411.1
IL_8UZ3_1261/2/515:521,
1/2/528:536
No text annotation
IL_8UZ3_1271/2/580:584,
1/2/757:761
tSH-tHW-tHS
geometric
IL_5J7L_027
NA
IL_8UZ3_1321/2/654:655,
1/2/751:754
Major groove platform; stack outside cWW
geometric
IL_5J7L_031
NA
IL_8UZ3_1331/2/659:660,
1/2/745:747
Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_8UZ3_1341/2/662:666,
1/2/740:743
Tandem non-canonical cWW pairs
geometric
IL_5J7L_033
NA
IL_8UZ3_1351/2/673:678,
1/2/712:717
No text annotation
IL_8UZ3_1361/2/684:688,
1/2/699:706
Kink-turn
geometric
IL_5J7L_035
NA
IL_8UZ3_1371/2/774:778,
1/2/804:805
Left turn
geometric
IL_4LFB_032
IL_29346.3
IL_8UZ3_1381/2/779:783,
1/2/799:803
tSH-tHW-tHS
geometric
IL_5J7L_037
NA
IL_8UZ3_1391/2/887:894,
1/2/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_5J7L_038
NA
IL_8UZ3_1401/2/922:923,
1/2/1393:1395
Single bulged A
geometric
IL_8CRE_443
IL_14190.1
IL_8UZ3_1411/2/925:927,
1/2/1390:1391
Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_8UZ3_1471/2/1051:1056,
1/2/1204:1207
No text annotation
IL_8UZ3_1491/2/1060:1061,
1/2/1195:1197
Single bulged A
geometric
IL_5J7L_049
NA
IL_8UZ3_1501/2/1061:1063,
1/2/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.1
IL_8UZ3_1551/2/1255:1258,
1/2/1277:1282
No text annotation
IL_8UZ3_1571/2/1399:1404,
1/2/1497:1504
No text annotation
IL_8UZ3_1581/2/1405:1407,
1/2/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5MWI_004
NA
IL_8UZ3_1591/2/1407:1409,
1/2/1491:1494
Decoding loop related
geometric
IL_2O3X_003
IL_61702.1
IL_8UZ3_1601/2/1412:1414,
1/2/1486:1488
Isolated non-canonical cWW pair
geometric
IL_8P9A_354
IL_01003.1
IL_8UZ3_1611/2/1416:1419,
1/2/1481:1484
Double sheared
geometric
IL_5J7L_062
NA
IL_8UZ3_1621/2/1430:1437,
1/2/1464:1470
No text annotation
IL_8UZ3_1651/3/17:18,
1/3/65:67
Major groove intercalation
geometric
IL_5J7L_355
NA
IL_8UZ3_1661/3/23:28,
1/3/56:60
No text annotation
geometric
IL_5J7L_356
NA
IL_8UZ3_1671/3/30:31,
1/3/51:54
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
NA
IL_8UZ3_1681/3/71:79,
1/3/97:105
Bacterial 5S Loop E
geometric
IL_5J7L_359
NA
IL_8UZ3_1691/5/29:31,
1/5/39:41
Isolated non-canonical cWW pair
geometric
IL_4PDQ_001
IL_01003.1

Problematic loops

#loop idProblemSequence
IL_8UZ3_009No text annotation
IL_8UZ3_030No text annotation
IL_8UZ3_039Kink-turn
IL_8UZ3_040No text annotation
IL_8UZ3_049No text annotation
IL_8UZ3_081No text annotation
IL_8UZ3_082No text annotation
IL_8UZ3_083No text annotation
IL_8UZ3_109Multiple bulged bases
IL_8UZ3_110Minor groove platform with extra cWW
IL_8UZ3_111Minor groove platform
IL_8UZ3_114Isolated cWH basepair
IL_8UZ3_115tWH-tWH-tHW-tHW
IL_8UZ3_121Single bulged G
IL_8UZ3_122No text annotation
IL_8UZ3_123tSH-tHW-tWW
IL_8UZ3_124No text annotation
IL_8UZ3_128Isolated non-canonical cWW pair
IL_8UZ3_129Major groove platform
IL_8UZ3_130Major groove minor groove platform; mini C-loop
IL_8UZ3_131No text annotation
IL_8UZ3_142Tandem non-canonical cWW pairs
IL_8UZ3_143Minor groove platform
IL_8UZ3_144No text annotation
IL_8UZ3_145No text annotation
IL_8UZ3_146Single bulged U
IL_8UZ3_148Minor groove platform
IL_8UZ3_151No text annotation
IL_8UZ3_152Minor groove platform
IL_8UZ3_153No text annotation
IL_8UZ3_154No text annotation
IL_8UZ3_156Double sheared with non-canonical cWW
IL_8UZ3_163Minor groove platform
IL_8UZ3_164No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8UZ3_0011/1/30:31,
1/1/474:484,
1/1/496:510
No text annotation
geometric
J3_5J7L_066
NA
J3_8UZ3_0021/1/32:35,
1/1/445:461,
1/1/468:473
No text annotation
geometric
J3_5J7L_067
NA
J3_8UZ3_0031/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
geometric
J3_8GLP_039
J3_01004.1
J3_8UZ3_0041/1/297:301,
1/1/316:325,
1/1/337:341
No text annotation
geometric
J3_5J7L_068
NA
J3_8UZ3_0051/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
geometric
J3_5J7L_038
NA
J3_8UZ3_0061/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
geometric
J3_5J7L_039
NA
J3_8UZ3_0081/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
geometric
J3_5J7L_041
NA
J3_8UZ3_0091/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
geometric
J3_7A0S_007
J3_47341.1
J3_8UZ3_0101/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
geometric
J3_5J7L_043
NA
J3_8UZ3_0111/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574
No text annotation
geometric
J3_5J7L_069
NA
J3_8UZ3_0121/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_8UZ3_0131/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427
No text annotation
geometric
J3_5J7L_070
NA
J3_8UZ3_0141/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
J3_8UZ3_0151/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
geometric
J3_5J7L_046
NA
J3_8UZ3_0161/1/2789:2791,
1/1/2805:2806,
1/1/2892:2894
No text annotation
geometric
J3_5J7L_047
NA
J3_8UZ3_0171/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
J3_8UZ3_0181/2/46:52,
1/2/359:367,
1/2/393:395
No text annotation
geometric
J3_4LFB_014
J3_63856.1
J3_8UZ3_0191/2/586:588,
1/2/651:654,
1/2/754:755
No text annotation
geometric
J3_5J7L_002
NA
J3_8UZ3_0201/2/586:588,
1/2/651:655,
1/2/751:755
No text annotation
geometric
J3_5J7L_051
NA
J3_8UZ3_0211/2/672:673,
1/2/717:725,
1/2/732:734
No text annotation
geometric
J3_5J7L_003
NA
J3_8UZ3_0221/2/826:829,
1/2/857:861,
1/2/868:874
No text annotation
geometric
J3_5J7L_004
NA
J3_8UZ3_0231/2/933:939,
1/2/1344:1350,
1/2/1372:1384
No text annotation
J3_8UZ3_0241/2/943:946,
1/2/1235:1237,
1/2/1337:1340
No text annotation
geometric
J3_8CRE_079
J3_44359.1
J3_8UZ3_0281/2/1063:1068,
1/2/1107:1113,
1/2/1187:1193
No text annotation
geometric
J3_5J7L_008
NA
J3_8UZ3_0291/2/1073:1074,
1/2/1083:1087,
1/2/1098:1102
No text annotation
J3_8UZ3_0331/3/10:16,
1/3/68:70,
1/3/106:110
No text annotation
geometric
J3_5J7L_049
NA
J4_8UZ3_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424
No text annotation
J4_8UZ3_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656
No text annotation
J4_8UZ3_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010
No text annotation
J4_8UZ3_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604
No text annotation
J4_8UZ3_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603
No text annotation
J4_8UZ3_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547
No text annotation
J4_8UZ3_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979
No text annotation
J4_8UZ3_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972
No text annotation
J4_8UZ3_0091/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383
No text annotation
J4_8UZ3_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771
No text annotation
J4_8UZ3_0111/2/115:122,
1/2/239:240,
1/2/286:289,
1/2/311:312
No text annotation
J4_8UZ3_0121/2/142:144,
1/2/178:184,
1/2/193:198,
1/2/219:221
No text annotation
J4_8UZ3_0131/2/569:577,
1/2/764:769,
1/2/810:821,
1/2/879:881
No text annotation
J4_8UZ3_0141/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66
No text annotation
J5_8UZ3_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178
No text annotation
J5_8UZ3_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018
No text annotation
J5_8UZ3_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256
No text annotation
J5_8UZ3_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990
No text annotation
J5_8UZ3_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611
No text annotation
J5_8UZ3_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435
No text annotation
J5_8UZ3_0081/2/58:61,
1/2/106:113,
1/2/314:316,
1/2/337:339,
1/2/350:354
No text annotation
J6_8UZ3_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433
No text annotation
J6_8UZ3_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435
No text annotation
J7_8UZ3_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895
No text annotation
J7_8UZ3_0021/1/817:822,
1/1/835:837,
1/1/942:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_8UZ3_007No text annotation
J3_8UZ3_025No text annotation
J3_8UZ3_026No text annotation
J3_8UZ3_027No text annotation
J3_8UZ3_030No text annotation
J3_8UZ3_031No text annotation
J3_8UZ3_032No text annotation
J5_8UZ3_007No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.1463 s