HL_8V03_030

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V03_030 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.2756

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8V03|1|1|U|1222
8V03|1|1|G|1223
8V03|1|1|U|1224
8V03|1|1|G|1225
8V03|1|1|A|1226
8V03|1|1|G|1227

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

Large ribosomal subunit protein bL21