HL_8V1I_002

3D structure

PDB id

8V1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human mascRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UGGUUUCCA

Length

9 nucleotides

Bulged bases

8V1I|1|A|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V1I_002 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.2933

The information below is about HL_4LX6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8V1I|1|A|U|22
8V1I|1|A|G|23
8V1I|1|A|G|24
8V1I|1|A|U|25
8V1I|1|A|U|26
8V1I|1|A|U|27
8V1I|1|A|C|28
8V1I|1|A|C|29
8V1I|1|A|A|30

Current chains

Chain A

mascRNA

Nearby chains