HL_8V83_018
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- CUGAGGAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V83_018 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3738
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8V83|1|1|C|758
8V83|1|1|U|759
8V83|1|1|G|760
8V83|1|1|A|761
8V83|1|1|G|769
8V83|1|1|G|770
8V83|1|1|A|771
8V83|1|1|U|772
8V83|1|1|G|773
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain J
- rRNA-processing protein EBP2
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