8V83 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8V83_002 | 1/1/69:74 | No text annotation | geometric HL_5TBW_002 NA | |
| HL_8V83_003 | 1/1/90:96 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_8V83_004 | 1/1/132:136 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_8V83_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_010 HL_13999.2 | |
| HL_8V83_006 | 1/1/208:212 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8V83_007 | 1/1/216:224 | T-loop with unstacked turn | geometric HL_5TBW_007 NA | |
| HL_8V83_009 | 1/1/304:311 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_8V83_010 | 1/1/357:362 | GNRA | geometric HL_4V9F_015 HL_34789.2 | |
| HL_8V83_011 | 1/1/382:387 | No text annotation | geometric HL_3SIU_002 HL_50006.5 | |
| HL_8V83_012 | 1/1/463:466 | Mini UNCG | geometric HL_4L8H_001 HL_90436.2 | |
| HL_8V83_014 | 1/1/598:605 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.1 | |
| HL_8V83_015 | 1/1/640:649 | No text annotation | ||
| HL_8V83_016 | 1/1/686:694 | No text annotation | geometric HL_5TBW_015 NA | |
| HL_8V83_017 | 1/1/732:737 | GNRA related | geometric HL_3OXE_002 HL_37569.2 | |
| HL_8V83_021 | 1/1/958:963 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8V83_023 | 1/1/1126:1132 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_8V83_024 | 1/1/1148:1155 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_8V83_025 | 1/1/1239:1249 | No text annotation | geometric HL_5D8H_001 HL_20174.1 | |
| HL_8V83_026 | 1/1/1267:1274 | GNRA wlth tandem sheared | geometric HL_6PRV_002 HL_98423.2 | |
| HL_8V83_027 | 1/1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8V83_028 | 1/1/1403:1408 | GNRA | geometric HL_5TBW_036 NA | |
| HL_8V83_030 | 1/1/2369:2378 | T-loop with unstacked turn | geometric HL_4FRN_007 NA | |
| HL_8V83_033 | 1/1/2897:2904 | GNRA variation | geometric HL_7A0S_060 HL_46665.2 | |
| HL_8V83_035 | 1/1/3025:3030 | GNRA | geometric HL_5B2P_001 HL_34789.2 | |
| HL_8V83_037 | 1/1/3110:3124 | No text annotation | geometric HL_5TBW_067 NA | |
| HL_8V83_038 | 1/1/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_8V83_039 | 1/1/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_8V83_040 | 1/1/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_8V83_046 | 1/2/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8V83_042 | 1/2/69:89 | No text annotation | homologous HL_8P4V_073 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8V83_001 | No text annotation | ||
| HL_8V83_008 | Mini UNCG | ||
| HL_8V83_013 | No text annotation | ||
| HL_8V83_018 | No text annotation | ||
| HL_8V83_019 | No text annotation | ||
| HL_8V83_020 | No text annotation | ||
| HL_8V83_022 | No text annotation | ||
| HL_8V83_029 | No text annotation | ||
| HL_8V83_031 | UNCG | ||
| HL_8V83_032 | No text annotation | ||
| HL_8V83_044 | tRNA anticodon loop | ||
| HL_8V83_034 | No text annotation | ||
| HL_8V83_036 | No text annotation | ||
| HL_8V83_045 | No text annotation | ||
| HL_8V83_041 | Mini UNCG | ||
| HL_8V83_043 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8V83_001 | 1/1/7:8, 1/2/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8V83_002 | 1/1/13:15, 1/2/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8V83_003 | 1/1/27:28, 1/1/56:58 | Single stack bend | geometric IL_5TBW_004 NA | |
| IL_8V83_004 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_006 NA | |
| IL_8V83_005 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8V83_006 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_8V83_007 | 1/1/164:166, 1/1/256:257 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_8V83_008 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_8V83_009 | 1/1/177:178, 1/1/238:241 | Minor groove platform | geometric IL_4KQY_004 IL_94991.2 | |
| IL_8V83_010 | 1/1/189:191, 1/1/204:205 | Single bulged U | geometric IL_4V9F_013 IL_97561.2 | |
| IL_8V83_011 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_8V83_012 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8V83_013 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8V83_014 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_8V83_015 | 1/1/445:449, 1/1/485:489 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.2 | |
| IL_8V83_016 | 1/1/452:454, 1/1/476:482 | No text annotation | ||
| IL_8V83_017 | 1/1/462:463, 1/1/466:468 | Single bulged U | geometric IL_7RQB_008 NA | |
| IL_8V83_018 | 1/1/512:513, 1/1/577:579 | Single bulged A | geometric IL_5TBW_018 NA | |
| IL_8V83_019 | 1/1/517:525, 1/1/567:573 | No text annotation | geometric IL_5TBW_019 NA | |
| IL_8V83_020 | 1/1/531:538, 1/1/553:561 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_8V83_021 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_01003.2 | |
| IL_8V83_022 | 1/1/680:684, 1/1/696:700 | No text annotation | geometric IL_5TBW_022 NA | |
| IL_8V83_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN variation | geometric IL_5J7L_303 NA | |
| IL_8V83_025 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.2 | |
| IL_8V83_026 | 1/1/805:809, 1/1/931:938 | No text annotation | ||
| IL_8V83_029 | 1/1/969:970, 1/1/1111:1113 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_8V83_094 | 1/1/977:981, 1/1/1102:1104 | No text annotation | ||
| IL_8V83_031 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_8V83_032 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.2 | |
| IL_8V83_033 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_8V83_034 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_8V83_035 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_8V83_036 | 1/1/1187:1192, 1/1/1306:1319 | No text annotation | ||
| IL_8V83_095 | 1/1/1187:1205, 1/1/1299:1319 | No text annotation | ||
| IL_8V83_037 | 1/1/1192:1205, 1/1/1299:1306 | No text annotation | ||
| IL_8V83_038 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
| IL_8V83_039 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_8V83_040 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | geometric IL_4V9F_043 NA | |
| IL_8V83_041 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.2 | |
| IL_8V83_042 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair | geometric IL_5TBW_057 NA | |
| IL_8V83_043 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | geometric IL_5TBW_058 NA | |
| IL_8V83_044 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | geometric IL_5TBW_059 NA | |
| IL_8V83_045 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_4V9F_002 IL_14190.2 | |
| IL_8V83_046 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5TBW_061 NA | |
| IL_8V83_049 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | ||
| IL_8V83_051 | 1/1/2391:2395, 1/1/2985:2988 | No text annotation | ||
| IL_8V83_064 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8V83_097 | 1/1/2885:2891, 1/1/2910:2917 | No text annotation | ||
| IL_8V83_067 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | geometric IL_5TBW_114 NA | |
| IL_8V83_068 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | geometric IL_3TD0_006 NA | |
| IL_8V83_069 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8V83_070 | 1/1/3047:3053, 1/1/3090:3094 | No text annotation | ||
| IL_8V83_072 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.2 | |
| IL_8V83_073 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | geometric IL_5TBW_120 NA | |
| IL_8V83_074 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_8V83_075 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_8V83_076 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8V83_077 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | geometric IL_5TBW_126 NA | |
| IL_8V83_078 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_01003.2 | |
| IL_8V83_079 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.2 | |
| IL_8V83_080 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.2 | |
| IL_8V83_081 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_8V83_082 | 1/1/3322:3325, 1/1/3381:3385 | No text annotation | ||
| IL_8V83_083 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges | geometric IL_4PKD_001 IL_68118.2 | |
| IL_8V83_084 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | geometric IL_5TBW_133 NA | |
| IL_8V83_087 | 1/2/44:64, 1/2/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8V83_088 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_8V83_089 | 1/2/68:69, 1/2/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_8V83_091 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_8V83_092 | 1/6/30:32, 1/6/46:48 | No text annotation | ||
| IL_8V83_099 | 1/6/30:34, 1/6/45:48 | No text annotation | ||
| IL_8V83_093 | 1/6/32:34, 1/6/45:46 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8V83_024 | No text annotation | ||
| IL_8V83_027 | Isolated non-canonical cWW pair | ||
| IL_8V83_028 | Isolated non-canonical cWW pair | ||
| IL_8V83_030 | No text annotation | ||
| IL_8V83_047 | No text annotation | ||
| IL_8V83_048 | No text annotation | ||
| IL_8V83_050 | No text annotation | ||
| IL_8V83_096 | No text annotation | ||
| IL_8V83_052 | Isolated non-canonical cWW pair | ||
| IL_8V83_053 | Single bulged A | ||
| IL_8V83_054 | No text annotation | ||
| IL_8V83_100 | No text annotation | ||
| IL_8V83_055 | No text annotation | ||
| IL_8V83_056 | No text annotation | ||
| IL_8V83_057 | No text annotation | ||
| IL_8V83_058 | Minor groove platform | ||
| IL_8V83_059 | No text annotation | ||
| IL_8V83_060 | Intercalated cWW | ||
| IL_8V83_061 | Single stack bend | ||
| IL_8V83_062 | No text annotation | ||
| IL_8V83_063 | No text annotation | ||
| IL_8V83_065 | Single bulged A | ||
| IL_8V83_066 | Minor groove platform | ||
| IL_8V83_071 | No text annotation | ||
| IL_8V83_085 | No text annotation | ||
| IL_8V83_098 | No text annotation | ||
| IL_8V83_086 | No text annotation | ||
| IL_8V83_090 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8V83_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_8V83_005 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_8V83_006 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8V83_007 | 1/1/340:356, 1/1/363:368, 1/2/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8V83_008 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8V83_009 | 1/1/369:379, 1/1/390:404, 1/2/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_8V83_010 | 1/1/436:442, 1/1/492:495, 1/1/618:623 | No text annotation | ||
| J3_8V83_011 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8V83_002 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | homologous J3_8P9A_052 J3_37832.1 | |
| J3_8V83_012 | 1/1/1451:1458, 1/1/1879:1880, 1/1/2352:2353 | No text annotation | ||
| J3_8V83_003 | 1/1/2881:2884, 1/1/2918:2922, 1/1/2942:2945 | No text annotation | ||
| J3_8V83_004 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8V83_013 | 1/2/44:45, 1/2/58:64, 1/2/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J4_8V83_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8V83_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8V83_003 | 1/1/675:678, 1/1/702:721, 1/1/749:752, 1/1/779:787 | No text annotation | ||
| J4_8V83_004 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_8V83_001 | 1/1/20:22, 1/2/35:42, 1/2/102:107, 1/2/115:116, 1/2/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8V83_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J6_8V83_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/2/32:35 | No text annotation | ||
| J7_8V83_001 | 1/1/949:956, 1/1/965:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
No problematic loops
Coloring options: