HL_8V83_031

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_031 not in the Motif Atlas

Geometric match to HL_4LFB_011

Geometric discrepancy: 0.3164

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8V83|1|1|C|2470
8V83|1|1|U|2471
8V83|1|1|U|2472
8V83|1|1|C|2473
8V83|1|1|G|2474
8V83|1|1|G|2475

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain a

Large ribosomal subunit protein uL1A