HL_8V83_044

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8V83|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_044 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3747

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8V83|1|1|A|2896
8V83|1|1|A|2897
8V83|1|1|G|2898
8V83|1|1|C|2899
8V83|1|1|A|2900
8V83|1|1|G|2901
8V83|1|1|A|2902
8V83|1|1|A|2903
8V83|1|1|U|2904
8V83|1|1|U|2905

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2