HL_8V84_009

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAAUUC

Length

8 nucleotides

Bulged bases

8V84|1|1|A|307, 8V84|1|1|U|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_009 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.23

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

8V84|1|1|G|304
8V84|1|1|U|305
8V84|1|1|A|306
8V84|1|1|A|307
8V84|1|1|A|308
8V84|1|1|U|309
8V84|1|1|U|310
8V84|1|1|C|311

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain D

ATP-dependent RNA helicase HAS1

Chain m

Ribosome biogenesis protein ERB1