HL_8V84_036

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAUCAG

Length

8 nucleotides

Bulged bases

8V84|1|1|G|3069

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_036 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3416

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8V84|1|1|C|3067
8V84|1|1|U|3068
8V84|1|1|G|3069
8V84|1|1|A|3070
8V84|1|1|U|3071
8V84|1|1|C|3072
8V84|1|1|A|3073
8V84|1|1|G|3074

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain Z

Ribosome biogenesis protein SSF1