HL_8V84_044

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8V84|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V84|1|1|A|2896
8V84|1|1|A|2897
8V84|1|1|G|2898
8V84|1|1|C|2899
8V84|1|1|A|2900
8V84|1|1|G|2901
8V84|1|1|A|2902
8V84|1|1|A|2903
8V84|1|1|U|2904
8V84|1|1|U|2905

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10

Chain H

Large ribosomal subunit protein uL6A

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2