HL_8V87_001
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_001 not in the Motif Atlas
- Geometric match to HL_2B3J_001
- Geometric discrepancy: 0.3224
- The information below is about HL_2B3J_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41169.1
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 4
Unit IDs
8V87|1|1|U|38
8V87|1|1|A|39
8V87|1|1|A|40
8V87|1|1|G|41
8V87|1|1|C|42
8V87|1|1|A|43
8V87|1|1|U|44
8V87|1|1|A|45
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal subunit assembly/export protein LOC1
- Chain J
- rRNA-processing protein EBP2
- Chain L
- 60S ribosomal protein L13-A
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