HL_8V87_007

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8V87|1|1|G|218, 8V87|1|1|A|219, 8V87|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_007 not in the Motif Atlas

Geometric match to HL_5TBW_007

Geometric discrepancy: 0.075

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8V87|1|1|G|216
8V87|1|1|U|217
8V87|1|1|G|218
8V87|1|1|A|219
8V87|1|1|G|220
8V87|1|1|A|221
8V87|1|1|A|222
8V87|1|1|U|223
8V87|1|1|C|224

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A