HL_8V87_021

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8V87|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_021 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3877

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8V87|1|1|C|958
8V87|1|1|C|959
8V87|1|1|U|960
8V87|1|1|C|961
8V87|1|1|A|962
8V87|1|1|G|963

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal subunit assembly/export protein LOC1

Chain J

rRNA-processing protein EBP2

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase