HL_8V87_050
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8V87|1|1|G|3116, 8V87|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_050 not in the Motif Atlas
- Geometric match to HL_5TBW_067
- Geometric discrepancy: 0.1232
- The information below is about HL_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8V87|1|1|C|3110
8V87|1|1|U|3111
8V87|1|1|G|3112
8V87|1|1|A|3113
8V87|1|1|A|3114
8V87|1|1|C|3115
8V87|1|1|G|3116
8V87|1|1|C|3117
8V87|1|1|C|3118
8V87|1|1|U|3119
8V87|1|1|C|3120
8V87|1|1|U|3121
8V87|1|1|A|3122
8V87|1|1|A|3123
8V87|1|1|G|3124
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain H
- Large ribosomal subunit protein uL6A
- Chain O
- Large ribosomal subunit protein uL13A
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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