HL_8V9J_007

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

8V9J|1|A|U|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9J_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.2028

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

8V9J|1|A|C|224
8V9J|1|A|A|225
8V9J|1|A|A|226
8V9J|1|A|A|227
8V9J|1|A|A|228
8V9J|1|A|U|229
8V9J|1|A|G|230

Current chains

Chain A

23S Ribosomal RNA

Nearby chains