HL_8V9J_013
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8V9J|1|A|G|411, 8V9J|1|A|A|412, 8V9J|1|A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9J_013 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0956
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8V9J|1|A|G|409
8V9J|1|A|U|410
8V9J|1|A|G|411
8V9J|1|A|A|412
8V9J|1|A|G|413
8V9J|1|A|A|414
8V9J|1|A|G|415
8V9J|1|A|C|416
8V9J|1|A|C|417
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S Ribosomal Protein L4
- Chain W
- 50S ribosomal protein L24
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