HL_8V9J_053

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

8V9J|1|A|A|2254, 8V9J|1|A|A|2255, 8V9J|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9J_053 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1257

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8V9J|1|A|G|2251
8V9J|1|A|U|2252
8V9J|1|A|A|2253
8V9J|1|A|A|2254
8V9J|1|A|A|2255
8V9J|1|A|G|2256
8V9J|1|A|A|2257
8V9J|1|A|U|2258
8V9J|1|A|G|2259
8V9J|1|A|C|2260

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain 9

50S Ribosomal Protein L37

Chain D

50S ribosomal protein L3