HL_8V9J_065

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9J_065 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1122

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8V9J|1|A|C|2775
8V9J|1|A|U|2776
8V9J|1|A|G|2777
8V9J|1|A|U|2778
8V9J|1|A|U|2779
8V9J|1|A|C|2780
8V9J|1|A|G|2781

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)