HL_8V9K_036

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

8V9K|1|A|C|1440, 8V9K|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_036 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1389

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8V9K|1|A|G|1439
8V9K|1|A|C|1440
8V9K|1|A|C|1441
8V9K|1|A|A|1442
8V9K|1|A|G|1443
8V9K|1|A|U|1444
8V9K|1|A|C|1445

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain U

Large ribosomal subunit protein uL22