8V9K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8V9K_001 | 1/A/56:65 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_8V9K_002 | 1/A/84:93 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_8V9K_003 | 1/A/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_8V9K_004 | 1/A/134:141 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_8V9K_005 | 1/A/157:167 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_8V9K_006 | 1/A/193:200 | No text annotation | geometric HL_7A0S_006 HL_48677.1 | |
| HL_8V9K_007 | 1/A/224:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_8V9K_008 | 1/A/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8V9K_009 | 1/A/283:303 | No text annotation | ||
| HL_8V9K_011 | 1/A/387:394 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_8V9K_012 | 1/A/401:405 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_8V9K_013 | 1/A/409:417 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8V9K_014 | 1/A/469:481 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_8V9K_015 | 1/A/498:505 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_8V9K_016 | 1/A/550:555 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_8V9K_017 | 1/A/575:580 | GNRA | homologous HL_7A0S_016 HL_34789.1 | |
| HL_8V9K_018 | 1/A/634:637 | No text annotation | ||
| HL_8V9K_019 | 1/A/658:667 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_8V9K_020 | 1/A/705:710 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_8V9K_021 | 1/A/723:728 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8V9K_022 | 1/A/735:741 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8V9K_023 | 1/A/755:760 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_8V9K_024 | 1/A/827:834 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_8V9K_025 | 1/A/859:868 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_8V9K_026 | 1/A/894:900 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_8V9K_027 | 1/A/941:946 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_8V9K_029 | 1/A/1072:1079 | GNRA | homologous HL_7RQB_027 NA | |
| HL_8V9K_030 | 1/A/1096:1103 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_8V9K_031 | 1/A/1182:1192 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_8V9K_032 | 1/A/1210:1217 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_8V9K_033 | 1/A/1290:1293 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_8V9K_034 | 1/A/1336:1341 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_8V9K_035 | 1/A/1396:1404 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_8V9K_036 | 1/A/1439:1445 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_8V9K_037 | 1/A/1478:1483 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8V9K_038 | 1/A/1504:1513 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_8V9K_040 | 1/A/1671:1682 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_8V9K_041 | 1/A/1712:1718 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8V9K_042 | 1/A/1753:1760 | No text annotation | geometric HL_6CF2_001 NA | |
| HL_8V9K_043 | 1/A/1785:1788 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_8V9K_044 | 1/A/1830:1837 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8V9K_045 | 1/A/1848:1854 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8V9K_046 | 1/A/1909:1914 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8V9K_047 | 1/A/1945:1948 | No text annotation | geometric HL_8VM9_005 HL_32346.5 | |
| HL_8V9K_048 | 1/A/1969:1973 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8V9K_049 | 1/A/1994:2004 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_8V9K_050 | 1/A/2023:2028 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_8V9K_052 | 1/A/2134:2144 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8V9K_053 | 1/A/2173:2181 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_8V9K_054 | 1/A/2251:2260 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8V9K_056 | 1/A/2432:2439 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8V9K_057 | 1/A/2472:2480 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_8V9K_058 | 1/A/2488:2500 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_8V9K_111 | 1/A/2528:2536 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8V9K_060 | 1/A/2548:2555 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.1 | |
| HL_8V9K_061 | 1/A/2579:2586 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_8V9K_062 | 1/A/2598:2603 | GNRA | homologous HL_7RQB_058 NA | |
| HL_8V9K_063 | 1/A/2628:2637 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_8V9K_064 | 1/A/2695:2703 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_8V9K_065 | 1/A/2752:2759 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8V9K_066 | 1/A/2775:2781 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8V9K_067 | 1/A/2818:2823 | GNRA | homologous HL_7RQB_063 NA | |
| HL_8V9K_068 | 1/A/2882:2887 | GNRA | homologous HL_7A0S_063 HL_34789.1 | |
| HL_8V9K_069 | 1/A/2925:2930 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_8V9K_070 | 1/A/2969:2983 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_8V9K_072 | 1/A/3040:3048 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8V9K_073 | 1/A/3077:3082 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_8V9K_112 | 1/B/35:49 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_8V9K_074 | 1/B/39:45 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_8V9K_075 | 1/B/85:90 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_8V9K_076 | 1/a/16:26 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_8V9K_078 | 1/a/155:160 | GNRA | homologous HL_5J7L_003 NA | |
| HL_8V9K_081 | 1/a/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8V9K_082 | 1/a/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_8V9K_083 | 1/a/320:333 | No text annotation | ||
| HL_8V9K_084 | 1/a/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_8V9K_088 | 1/a/502:507 | No text annotation | geometric HL_2ZNI_001 HL_75660.6 | |
| HL_8V9K_090 | 1/a/669:678 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_8V9K_091 | 1/a/706:711 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8V9K_092 | 1/a/766:776 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_8V9K_094 | 1/a/844:849 | GNRA | homologous HL_5J7L_019 NA | |
| HL_8V9K_095 | 1/a/879:884 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_8V9K_096 | 1/a/945:954 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_8V9K_099 | 1/a/1056:1061 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_8V9K_100 | 1/a/1069:1076 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_8V9K_101 | 1/a/1114:1121 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8V9K_102 | 1/a/1146:1152 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_8V9K_104 | 1/a/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8V9K_105 | 1/a/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_8V9K_106 | 1/a/1432:1438 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_8V9K_107 | 1/a/1499:1504 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_8V9K_114 | 1/y/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8V9K_110 | 1/y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1B23_003 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8V9K_010 | Externally structured | ||
| HL_8V9K_028 | No text annotation | ||
| HL_8V9K_039 | Purine riboswitch | ||
| HL_8V9K_051 | No text annotation | ||
| HL_8V9K_055 | No text annotation | ||
| HL_8V9K_059 | No text annotation | ||
| HL_8V9K_071 | No text annotation | ||
| HL_8V9K_077 | No text annotation | ||
| HL_8V9K_079 | No text annotation | ||
| HL_8V9K_080 | No text annotation | ||
| HL_8V9K_085 | GNRA | ||
| HL_8V9K_086 | UNCG | ||
| HL_8V9K_113 | No text annotation | ||
| HL_8V9K_087 | No text annotation | ||
| HL_8V9K_089 | GNRA-like with tWH | ||
| HL_8V9K_093 | Mini UNCG | ||
| HL_8V9K_097 | GNRA | ||
| HL_8V9K_098 | No text annotation | ||
| HL_8V9K_103 | GNRA | ||
| HL_8V9K_108 | No text annotation | ||
| HL_8V9K_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8V9K_001 | 1/A/21:27, 1/A/597:603 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_8V9K_002 | 1/A/33:34, 1/A/530:532 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_8V9K_003 | 1/A/40:41, 1/A/522:524 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8V9K_004 | 1/A/78:82, 1/A/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8V9K_005 | 1/A/182:183, 1/A/211:213 | Single stack bend | homologous IL_4WF9_007 IL_15011.1 | |
| IL_8V9K_006 | 1/A/187:193, 1/A/200:207 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.1 | |
| IL_8V9K_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8V9K_008 | 1/A/322:324, 1/A/452:454 | Isolated non-canonical cWW pair | geometric IL_7A0S_042 IL_01003.1 | |
| IL_8V9K_009 | 1/A/324:325, 1/A/450:452 | Single stack bend | geometric IL_4V9F_005 IL_15011.1 | |
| IL_8V9K_010 | 1/A/356:364, 1/A/438:439 | No text annotation | ||
| IL_8V9K_011 | 1/A/369:371, 1/A/432:433 | Single bulged U | geometric IL_4V9F_107 IL_97561.1 | |
| IL_8V9K_012 | 1/A/374:376, 1/A/425:429 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8V9K_013 | 1/A/382:384, 1/A/397:398 | Single bulged U | geometric IL_3TZR_002 NA | |
| IL_8V9K_014 | 1/A/569:572, 1/A/583:596 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_8V9K_015 | 1/A/623:626, 1/A/646:649 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8V9K_016 | 1/A/630:631, 1/A/640:642 | Single bulged U | geometric IL_1S03_005 IL_97561.1 | |
| IL_8V9K_017 | 1/A/656:658, 1/A/667:669 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
| IL_8V9K_018 | 1/A/683:685, 1/A/780:781 | Single bulged A | homologous IL_7A0S_012 IL_14190.1 | |
| IL_8V9K_019 | 1/A/699:703, 1/A/712:716 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_8V9K_020 | 1/A/787:789, 1/A/921:923 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.1 | |
| IL_8V9K_021 | 1/A/789:793, 1/A/914:921 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_8V9K_022 | 1/A/812:813, 1/A/878:880 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8V9K_023 | 1/A/817:818, 1/A/843:845 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_8V9K_024 | 1/A/818:822, 1/A/839:843 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_8V9K_025 | 1/A/853:855, 1/A/872:873 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_8V9K_026 | 1/A/890:892, 1/A/902:906 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_8V9K_027 | 1/A/952:953, 1/A/1057:1059 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_8V9K_028 | 1/A/959:961, 1/A/1048:1051 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_8V9K_205 | 1/A/959:964, 1/A/1043:1051 | No text annotation | ||
| IL_8V9K_029 | 1/A/961:964, 1/A/1043:1048 | No text annotation | ||
| IL_8V9K_030 | 1/A/971:977, 1/A/1030:1036 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_8V9K_031 | 1/A/977:978, 1/A/1028:1030 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_8V9K_032 | 1/A/979:984, 1/A/1024:1027 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_8V9K_033 | 1/A/986:988, 1/A/1020:1022 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_8V9K_034 | 1/A/991:996, 1/A/1012:1017 | No text annotation | ||
| IL_8V9K_036 | 1/A/1066:1067, 1/A/1084:1086 | Single bulged G | geometric IL_4LVW_002 IL_28408.1 | |
| IL_8V9K_037 | 1/A/1112:1114, 1/A/1278:1279 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_8V9K_038 | 1/A/1116:1120, 1/A/1272:1276 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_8V9K_039 | 1/A/1122:1129, 1/A/1269:1270 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_11411.1 | |
| IL_8V9K_040 | 1/A/1129:1131, 1/A/1268:1269 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_8V9K_041 | 1/A/1136:1142, 1/A/1258:1263 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_8V9K_042 | 1/A/1142:1148, 1/A/1242:1258 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_8V9K_043 | 1/A/1149:1152, 1/A/1239:1241 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_30229.1 | |
| IL_8V9K_045 | 1/A/1161:1169, 1/A/1226:1230 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_8V9K_046 | 1/A/1177:1180, 1/A/1194:1197 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_8V9K_047 | 1/A/1205:1209, 1/A/1218:1220 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_8V9K_048 | 1/A/1311:1313, 1/A/1362:1365 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 | |
| IL_8V9K_049 | 1/A/1322:1329, 1/A/1349:1353 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8V9K_050 | 1/A/1333:1334, 1/A/1343:1345 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_8V9K_051 | 1/A/1377:1384, 1/A/2235:2241 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8V9K_052 | 1/A/1425:1428, 1/A/1821:1822 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_74641.1 | |
| IL_8V9K_053 | 1/A/1434:1438, 1/A/1446:1448 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_8V9K_054 | 1/A/1466:1470, 1/A/1491:1495 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_8V9K_055 | 1/A/1472:1476, 1/A/1485:1489 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8V9K_056 | 1/A/1529:1531, 1/A/1804:1806 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_01003.1 | |
| IL_8V9K_062 | 1/A/1638:1642, 1/A/1797:1800 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_8V9K_063 | 1/A/1653:1656, 1/A/1777:1781 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_8V9K_064 | 1/A/1658:1661, 1/A/1771:1775 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8V9K_065 | 1/A/1689:1692, 1/A/1742:1746 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8V9K_066 | 1/A/1694:1699, 1/A/1735:1740 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8V9K_067 | 1/A/1702:1703, 1/A/1726:1732 | No text annotation | ||
| IL_8V9K_068 | 1/A/1709:1711, 1/A/1719:1720 | No text annotation | ||
| IL_8V9K_069 | 1/A/1869:1874, 1/A/2228:2230 | No text annotation | ||
| IL_8V9K_070 | 1/A/1881:1883, 1/A/2219:2221 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_8V9K_071 | 1/A/1884:1887, 1/A/2217:2218 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.1 | |
| IL_8V9K_197 | 1/A/1884:1892, 1/A/2214:2218 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_8V9K_072 | 1/A/1887:1892, 1/A/2214:2217 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_8V9K_073 | 1/A/1904:1909, 1/A/1914:1920 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8V9K_074 | 1/A/1930:1934, 1/A/1960:1963 | tWW and non-canonical cWW | geometric IL_4PMI_008 NA | |
| IL_8V9K_075 | 1/A/1937:1942, 1/A/1952:1957 | No text annotation | geometric IL_8ZA4_001 NA | |
| IL_8V9K_076 | 1/A/1944:1945, 1/A/1948:1950 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_8V9K_077 | 1/A/1987:1988, 1/A/2204:2206 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_8V9K_078 | 1/A/2015:2021, 1/A/2030:2038 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_8V9K_079 | 1/A/2054:2057, 1/A/2126:2127 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8V9K_080 | 1/A/2058:2059, 1/A/2122:2125 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8V9K_081 | 1/A/2063:2066, 1/A/2117:2118 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8V9K_082 | 1/A/2068:2072, 1/A/2111:2115 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_8V9K_083 | 1/A/2073:2078, 1/A/2105:2110 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_8V9K_084 | 1/A/2081:2084, 1/A/2098:2102 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8V9K_085 | 1/A/2157:2158, 1/A/2188:2191 | Bulged stacked bases | homologous IL_7A0S_071 IL_24886.1 | |
| IL_8V9K_086 | 1/A/2158:2169, 1/A/2185:2188 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_8V9K_087 | 1/A/2274:2276, 1/A/2841:2842 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_8V9K_088 | 1/A/2278:2280, 1/A/2836:2839 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_8V9K_089 | 1/A/2293:2294, 1/A/2662:2665 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8V9K_090 | 1/A/2304:2306, 1/A/2460:2463 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8V9K_091 | 1/A/2308:2310, 1/A/2456:2458 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_8V9K_092 | 1/A/2317:2319, 1/A/2416:2418 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_8V9K_093 | 1/A/2331:2333, 1/A/2402:2404 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_71625.1 | |
| IL_8V9K_094 | 1/A/2333:2343, 1/A/2401:2402 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_8V9K_095 | 1/A/2347:2351, 1/A/2383:2397 | Kink-turn related | homologous IL_5J7L_329 NA | |
| IL_8V9K_097 | 1/A/2425:2427, 1/A/2444:2445 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8V9K_098 | 1/A/2521:2523, 1/A/2541:2545 | Isolated tHS basepair with bulges | geometric IL_4V9F_080 IL_14250.1 | |
| IL_8V9K_099 | 1/A/2574:2577, 1/A/2588:2591 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_8V9K_100 | 1/A/2625:2627, 1/A/2638:2639 | Single bulged U | geometric IL_7KVT_002 IL_97561.1 | |
| IL_8V9K_101 | 1/A/2677:2678, 1/A/2722:2724 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_8V9K_102 | 1/A/2678:2679, 1/A/2720:2722 | Major groove platform | geometric IL_4WF9_090 IL_48076.7 | |
| IL_8V9K_103 | 1/A/2681:2683, 1/A/2717:2718 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_8V9K_104 | 1/A/2683:2685, 1/A/2713:2717 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 NA | |
| IL_8V9K_105 | 1/A/2685:2687, 1/A/2711:2713 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_71625.1 | |
| IL_8V9K_106 | 1/A/2690:2694, 1/A/2704:2708 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_8V9K_107 | 1/A/2731:2732, 1/A/2804:2806 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_8V9K_108 | 1/A/2734:2736, 1/A/2798:2802 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_8V9K_109 | 1/A/2736:2737, 1/A/2795:2798 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_8V9K_110 | 1/A/2746:2747, 1/A/2764:2767 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_8V9K_111 | 1/A/2815:2816, 1/A/2825:2827 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8V9K_112 | 1/A/2860:2864, 1/A/2998:3006 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8V9K_113 | 1/A/2876:2882, 1/A/2887:2892 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_8V9K_114 | 1/A/2904:2908, 1/A/2949:2951 | C-loop | homologous IL_4WF9_101 IL_63596.12 | |
| IL_8V9K_115 | 1/A/2911:2915, 1/A/2942:2946 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_8V9K_116 | 1/A/2919:2920, 1/A/2935:2938 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8V9K_117 | 1/A/2961:2966, 1/A/2986:2991 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_8V9K_118 | 1/A/3059:3061, 1/A/3098:3101 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.1 | |
| IL_8V9K_119 | 1/A/3064:3066, 1/A/3092:3095 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_8V9K_120 | 1/A/3068:3073, 1/A/3086:3090 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_8V9K_121 | 1/B/3:5, 1/B/113:114 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_8V9K_122 | 1/B/18:19, 1/B/66:68 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.1 | |
| IL_8V9K_123 | 1/B/24:29, 1/B/60:61 | No text annotation | ||
| IL_8V9K_199 | 1/B/24:30, 1/B/56:61 | No text annotation | ||
| IL_8V9K_124 | 1/B/29:30, 1/B/56:60 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8V9K_125 | 1/B/31:32, 1/B/52:55 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8V9K_126 | 1/B/35:39, 1/B/45:49 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_8V9K_127 | 1/B/72:80, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8V9K_128 | 1/a/34:36, 1/a/532:533 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_8V9K_129 | 1/a/48:49, 1/a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_8V9K_130 | 1/a/51:56, 1/a/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8V9K_131 | 1/a/58:60, 1/a/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_8V9K_207 | 1/a/67:70, 1/a/99:100 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_8V9K_136 | 1/a/125:128, 1/a/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_8V9K_137 | 1/a/129:133, 1/a/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_8V9K_140 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_8V9K_141 | 1/a/249:252, 1/a/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8V9K_142 | 1/a/292:293, 1/a/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_8V9K_209 | 1/a/371:376, 1/a/387:390 | No text annotation | ||
| IL_8V9K_149 | 1/a/495:501, 1/a/508:516 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8V9K_150 | 1/a/549:555, 1/a/862:863 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_8V9K_151 | 1/a/560:564, 1/a/737:741 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_8V9K_152 | 1/a/574:576, 1/a/624:625 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8V9K_153 | 1/a/577:578, 1/a/620:623 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_8V9K_154 | 1/a/585:591, 1/a/609:613 | No text annotation | geometric IL_8C3A_433 NA | |
| IL_8V9K_155 | 1/a/634:635, 1/a/731:734 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_8V9K_156 | 1/a/637:638, 1/a/727:729 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_8V9K_157 | 1/a/642:646, 1/a/720:723 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8V9K_201 | 1/a/653:657, 1/a/693:697 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_8V9K_159 | 1/a/664:668, 1/a/679:686 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8V9K_160 | 1/a/754:758, 1/a/784:785 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8V9K_161 | 1/a/759:763, 1/a/779:783 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_8V9K_163 | 1/a/869:876, 1/a/887:892 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8V9K_164 | 1/a/904:905, 1/a/1376:1378 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8V9K_165 | 1/a/907:909, 1/a/1373:1374 | Single bulged G | geometric IL_5J7L_040 NA | |
| IL_8V9K_167 | 1/a/915:917, 1/a/1363:1367 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8V9K_168 | 1/a/935:936, 1/a/1207:1209 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_8V9K_169 | 1/a/975:979, 1/a/1024:1025 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_8V9K_171 | 1/a/1028:1030, 1/a/1189:1190 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_8V9K_172 | 1/a/1032:1037, 1/a/1184:1187 | No text annotation | geometric IL_6CZR_365 NA | |
| IL_8V9K_202 | 1/a/1032:1038, 1/a/1180:1187 | No text annotation | geometric IL_4V88_510 NA | |
| IL_8V9K_173 | 1/a/1037:1038, 1/a/1180:1184 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_8V9K_174 | 1/a/1040:1041, 1/a/1176:1178 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_8V9K_175 | 1/a/1041:1043, 1/a/1174:1176 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_8V9K_177 | 1/a/1104:1108, 1/a/1125:1130 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8V9K_179 | 1/a/1139:1142, 1/a/1156:1162 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_8V9K_180 | 1/a/1228:1234, 1/a/1265:1272 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8V9K_181 | 1/a/1236:1239, 1/a/1258:1263 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_8V9K_203 | 1/a/1240:1244, 1/a/1253:1257 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8V9K_183 | 1/a/1285:1290, 1/a/1311:1316 | No text annotation | homologous IL_5J7L_057 NA | |
| IL_8V9K_184 | 1/a/1382:1384, 1/a/1485:1488 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_8V9K_185 | 1/a/1384:1387, 1/a/1481:1485 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8V9K_186 | 1/a/1388:1390, 1/a/1478:1480 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_8V9K_187 | 1/a/1390:1392, 1/a/1475:1478 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_8V9K_188 | 1/a/1395:1397, 1/a/1470:1472 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_01003.1 | |
| IL_8V9K_189 | 1/a/1399:1402, 1/a/1465:1468 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8V9K_190 | 1/a/1407:1410, 1/a/1457:1460 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8V9K_191 | 1/a/1413:1418, 1/a/1450:1454 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_8V9K_192 | 1/a/1418:1420, 1/a/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_8V9K_193 | 1/a/1423:1426, 1/a/1443:1445 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_8V9K_194 | 1/a/1428:1431, 1/a/1439:1441 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8V9K_195 | No text annotation | ||
| IL_8V9K_196 | No text annotation | ||
| IL_8V9K_206 | No text annotation | ||
| IL_8V9K_035 | Isolated non-canonical cWW pair | ||
| IL_8V9K_044 | Isolated non-canonical cWW pair | ||
| IL_8V9K_057 | No text annotation | ||
| IL_8V9K_058 | Isolated non-canonical cWW pair | ||
| IL_8V9K_059 | Isolated non-canonical cWW pair | ||
| IL_8V9K_060 | No text annotation | ||
| IL_8V9K_061 | Isolated non-canonical cWW pair | ||
| IL_8V9K_198 | No text annotation | ||
| IL_8V9K_096 | No text annotation | ||
| IL_8V9K_132 | Isolated cWS basepair | ||
| IL_8V9K_133 | Minor groove platform with extra cWW | ||
| IL_8V9K_134 | Minor groove platform | ||
| IL_8V9K_208 | Major groove platform | ||
| IL_8V9K_135 | Major groove platform with extra pair | ||
| IL_8V9K_138 | tWH-tWH-tHW-tHW | ||
| IL_8V9K_139 | Isolated cWS basepair | ||
| IL_8V9K_200 | No text annotation | ||
| IL_8V9K_143 | No text annotation | ||
| IL_8V9K_210 | No text annotation | ||
| IL_8V9K_144 | No text annotation | ||
| IL_8V9K_145 | No text annotation | ||
| IL_8V9K_146 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8V9K_147 | No text annotation | ||
| IL_8V9K_148 | SSU/LSU pseudoknot | ||
| IL_8V9K_158 | No text annotation | ||
| IL_8V9K_162 | Isolated non-canonical cWW pair | ||
| IL_8V9K_166 | Isolated non-canonical cWW pair | ||
| IL_8V9K_170 | No text annotation | ||
| IL_8V9K_176 | No text annotation | ||
| IL_8V9K_178 | Minor groove platform | ||
| IL_8V9K_182 | No text annotation | ||
| IL_8V9K_204 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8V9K_021 | 1/A/27:28, 1/A/562:569, 1/A/596:597 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8V9K_022 | 1/A/27:28, 1/A/562:572, 1/A/583:597 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_8V9K_023 | 1/A/29:32, 1/A/533:549, 1/A/556:561 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_8V9K_024 | 1/A/53:54, 1/A/67:73, 1/A/107:111 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8V9K_001 | 1/A/317:319, 1/A/457:463, 1/A/487:492 | No text annotation | ||
| J3_8V9K_025 | 1/A/325:331, 1/A/350:352, 1/A/443:450 | No text annotation | ||
| J3_8V9K_002 | 1/A/798:804, 1/A/888:890, 1/A/906:909 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8V9K_003 | 1/A/813:815, 1/A/847:851, 1/A/875:878 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8V9K_004 | 1/A/1173:1175, 1/A/1199:1205, 1/A/1220:1222 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_8V9K_005 | 1/A/1413:1418, 1/A/1843:1845, 1/A/1857:1860 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_8V9K_006 | 1/A/1421:1424, 1/A/1823:1829, 1/A/1838:1840 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_8V9K_026 | 1/A/1459:1465, 1/A/1496:1500, 1/A/1517:1518 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_8V9K_007 | 1/A/1531:1537, 1/A/1635:1637, 1/A/1801:1804 | No text annotation | ||
| J3_8V9K_027 | 1/A/1646:1650, 1/A/1784:1785, 1/A/1788:1793 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_8V9K_008 | 1/A/2314:2316, 1/A/2419:2423, 1/A/2447:2452 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_8V9K_028 | 1/A/2506:2508, 1/A/2608:2619, 1/A/2645:2651 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8V9K_009 | 1/A/2519:2521, 1/A/2545:2547, 1/A/2556:2561 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_8V9K_010 | 1/A/2741:2744, 1/A/2769:2771, 1/A/2785:2791 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_8V9K_011 | 1/A/3035:3037, 1/A/3051:3057, 1/A/3103:3107 | No text annotation | ||
| J3_8V9K_012 | 1/B/11:17, 1/B/69:71, 1/B/104:107 | No text annotation | ||
| J3_8V9K_029 | 1/a/50:51, 1/a/361:369, 1/a/392:395 | No text annotation | ||
| J3_8V9K_030 | 1/a/50:56, 1/a/359:369, 1/a/392:395 | No text annotation | ||
| J3_8V9K_031 | 1/a/566:568, 1/a/631:634, 1/a/734:735 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_8V9K_032 | 1/a/566:568, 1/a/631:635, 1/a/731:735 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_8V9K_033 | 1/a/652:653, 1/a/697:705, 1/a/712:714 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_8V9K_013 | 1/a/806:809, 1/a/839:843, 1/a/850:856 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8V9K_034 | 1/a/918:921, 1/a/1326:1332, 1/a/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8V9K_014 | 1/a/925:928, 1/a/1216:1218, 1/a/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_8V9K_015 | 1/a/937:944, 1/a/955:966, 1/a/1202:1206 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_8V9K_016 | 1/a/972:975, 1/a/1025:1027, 1/a/1191:1196 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_8V9K_040 | 1/a/972:979, 1/a/1024:1027, 1/a/1191:1196 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_8V9K_018 | 1/a/1043:1048, 1/a/1087:1093, 1/a/1168:1174 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8V9K_038 | 1/a/1053:1054, 1/a/1063:1066, 1/a/1079:1082 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8V9K_019 | 1/a/1096:1098, 1/a/1136:1139, 1/a/1162:1165 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8V9K_039 | 1/a/1096:1098, 1/a/1136:1142, 1/a/1156:1165 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8V9K_020 | 1/a/1218:1222, 1/a/1278:1285, 1/a/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_8V9K_001 | 1/A/269:274, 1/A/312:317, 1/A/492:494, 1/A/509:512 | No text annotation | ||
| J4_8V9K_002 | 1/A/378:382, 1/A/398:401, 1/A/405:407, 1/A/419:423 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_8V9K_003 | 1/A/1385:1391, 1/A/1409:1410, 1/A/1863:1866, 1/A/2233:2234 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_8V9K_004 | 1/A/1425:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1822 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_8V9K_005 | 1/A/1428:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1821 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_8V9K_006 | 1/A/1664:1667, 1/A/1686:1688, 1/A/1747:1751, 1/A/1762:1768 | No text annotation | ||
| J4_8V9K_007 | 1/A/1989:1993, 1/A/2005:2009, 1/A/2044:2047, 1/A/2199:2203 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8V9K_008 | 1/A/2050:2052, 1/A/2129:2130, 1/A/2148:2157, 1/A/2191:2196 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8V9K_009 | 1/A/2509:2513, 1/A/2567:2571, 1/A/2594:2596, 1/A/2605:2607 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8V9K_010 | 1/A/2867:2870, 1/A/2898:2900, 1/A/2955:2959, 1/A/2993:2995 | No text annotation | homologous J4_4WF9_009 J4_77044.5 | |
| J4_8V9K_011 | 1/a/111:119, 1/a/238:240, 1/a/286:289, 1/a/311:312 | No text annotation | ||
| J4_8V9K_013 | 1/a/555:557, 1/a/744:749, 1/a/790:801, 1/a/861:862 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_8V9K_014 | 1/y/7:10, 1/y/25:27, 1/y/43:49, 1/y/65:66 | tRNA junction | homologous J4_6UFG_001 NA | |
| J5_8V9K_001 | 1/A/44:51, 1/A/113:118, 1/A/127:128, 1/A/147:149, 1/A/175:177 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8V9K_002 | 1/A/269:274, 1/A/312:319, 1/A/457:463, 1/A/487:494, 1/A/509:512 | No text annotation | ||
| J5_8V9K_003 | 1/A/618:620, 1/A/652:656, 1/A/669:671, 1/A/1376:1377, 1/A/2241:2242 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_8V9K_004 | 1/A/676:681, 1/A/783:786, 1/A/924:927, 1/A/1310:1311, 1/A/1365:1371 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_8V9K_005 | 1/A/694:697, 1/A/718:722, 1/A/729:732, 1/A/744:749, 1/A/766:771 | No text annotation | ||
| J5_8V9K_006 | 1/A/1892:1900, 1/A/1924:1925, 1/A/1968:1969, 1/A/1973:1981, 1/A/2212:2214 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_8V9K_007 | 1/A/2281:2288, 1/A/2670:2677, 1/A/2724:2730, 1/A/2807:2812, 1/A/2830:2835 | No text annotation | ||
| J5_8V9K_008 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2506, 1/A/2651:2659 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_8V9K_009 | 1/a/40:43, 1/a/403:406, 1/a/436:440, 1/a/477:480, 1/a/525:528 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_8V9K_010 | 1/a/40:43, 1/a/403:406, 1/a/436:442, 1/a/472:480, 1/a/525:528 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_8V9K_011 | 1/a/62:65, 1/a/102:109, 1/a/314:316, 1/a/337:339, 1/a/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_8V9K_001 | 1/A/42:43, 1/A/178:182, 1/A/213:223, 1/A/231:235, 1/A/262:267, 1/A/514:521 | No text annotation | ||
| J6_8V9K_002 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2508, 1/A/2608:2619, 1/A/2645:2659 | No text annotation | ||
| J7_8V9K_001 | 1/A/932:937, 1/A/950:951, 1/A/1060:1063, 1/A/1089:1094, 1/A/1105:1109, 1/A/1282:1283, 1/A/1300:1305 | No text annotation | ||
| J8_8V9K_001 | 1/A/5:12, 1/A/612:618, 1/A/2242:2247, 1/A/2264:2267, 1/A/2849:2854, 1/A/3012:3015, 1/A/3027:3032, 1/A/3110:3115 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8V9K_035 | No text annotation | ||
| J3_8V9K_036 | No text annotation | ||
| J3_8V9K_041 | No text annotation | ||
| J3_8V9K_037 | No text annotation | ||
| J3_8V9K_017 | No text annotation | ||
| J4_8V9K_015 | No text annotation | ||
| J4_8V9K_012 | No text annotation |
Coloring options: