HL_8V9K_044

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8V9K|1|A|A|1832, 8V9K|1|A|A|1834, 8V9K|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_044 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1536

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8V9K|1|A|C|1830
8V9K|1|A|A|1831
8V9K|1|A|A|1832
8V9K|1|A|C|1833
8V9K|1|A|A|1834
8V9K|1|A|C|1835
8V9K|1|A|A|1836
8V9K|1|A|G|1837

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain U

Large ribosomal subunit protein uL22