HL_8V9K_054

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

8V9K|1|A|A|2254, 8V9K|1|A|A|2255, 8V9K|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_054 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1423

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8V9K|1|A|G|2251
8V9K|1|A|U|2252
8V9K|1|A|A|2253
8V9K|1|A|A|2254
8V9K|1|A|A|2255
8V9K|1|A|G|2256
8V9K|1|A|A|2257
8V9K|1|A|U|2258
8V9K|1|A|G|2259
8V9K|1|A|C|2260

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain 9

50S Ribosomal Protein L37

Chain D

50S ribosomal protein L3