HL_8V9K_062

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_062 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.0911

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8V9K|1|A|C|2598
8V9K|1|A|G|2599
8V9K|1|A|A|2600
8V9K|1|A|A|2601
8V9K|1|A|A|2602
8V9K|1|A|G|2603

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33A

Chain Q

Large ribosomal subunit protein uL18