HL_8V9K_093

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUCCUUG

Length

9 nucleotides

Bulged bases

8V9K|1|a|U|827

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_093 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.5582

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

8V9K|1|a|C|820
8V9K|1|a|C|821
8V9K|1|a|U|822
8V9K|1|a|U|823
8V9K|1|a|C|824
8V9K|1|a|C|825
8V9K|1|a|U|826
8V9K|1|a|U|827
8V9K|1|a|G|828

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain r

Small ribosomal subunit protein bS18B