HL_8V9L_013

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8V9L|1|A|G|411, 8V9L|1|A|A|412, 8V9L|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1107

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8V9L|1|A|G|409
8V9L|1|A|U|410
8V9L|1|A|G|411
8V9L|1|A|A|412
8V9L|1|A|G|413
8V9L|1|A|A|414
8V9L|1|A|G|415
8V9L|1|A|C|416
8V9L|1|A|C|417

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

50S ribosomal protein L24