3D structure

PDB id
8V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGUAAGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8V9L_024 not in the Motif Atlas
Homologous match to HL_7RQB_022
Geometric discrepancy: 0.102
The information below is about HL_7RQB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84085.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8V9L|1|A|G|827
8V9L|1|A|G|828
8V9L|1|A|U|829
8V9L|1|A|A|830
8V9L|1|A|A|831
8V9L|1|A|G|832
8V9L|1|A|A|833
8V9L|1|A|C|834

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain o
Small ribosomal subunit protein uS15

Coloring options:


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