HL_8V9L_031

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8V9L|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1737

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|C|1182
8V9L|1|A|U|1183
8V9L|1|A|U|1184
8V9L|1|A|A|1185
8V9L|1|A|G|1186
8V9L|1|A|A|1187
8V9L|1|A|A|1188
8V9L|1|A|G|1189
8V9L|1|A|C|1190
8V9L|1|A|A|1191
8V9L|1|A|G|1192

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain O

Large ribosomal subunit protein uL16

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)