3D structure

PDB id
8V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUUUG
Length
5 nucleotides
Bulged bases
8V9L|1|A|U|2092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8V9L_050 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.2411
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

8V9L|1|A|C|2089
8V9L|1|A|U|2090
8V9L|1|A|U|2091
8V9L|1|A|U|2092
8V9L|1|A|G|2093

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1008 s