HL_8V9L_051

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8V9L|1|A|A|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1256

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8V9L|1|A|G|2134
8V9L|1|A|U|2135
8V9L|1|A|A|2136
8V9L|1|A|A|2137
8V9L|1|A|C|2138
8V9L|1|A|U|2139
8V9L|1|A|A|2140
8V9L|1|A|U|2141
8V9L|1|A|A|2142
8V9L|1|A|A|2143
8V9L|1|A|C|2144

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)