HL_8V9L_057

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8V9L|1|A|A|2492, 8V9L|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0945

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8V9L|1|A|C|2488
8V9L|1|A|U|2489
8V9L|1|A|A|2490
8V9L|1|A|A|2491
8V9L|1|A|A|2492
8V9L|1|A|A|2493
8V9L|1|A|U|2494
8V9L|1|A|G|2495
8V9L|1|A|U|2496
8V9L|1|A|A|2497
8V9L|1|A|A|2498
8V9L|1|A|C|2499
8V9L|1|A|G|2500

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16

Chain Y

50S ribosomal protein L27