HL_8V9L_062

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

8V9L|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_062 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0767

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8V9L|1|A|U|2628
8V9L|1|A|G|2629
8V9L|1|A|A|2630
8V9L|1|A|G|2631
8V9L|1|A|U|2632
8V9L|1|A|G|2633
8V9L|1|A|G|2634
8V9L|1|A|A|2635
8V9L|1|A|A|2636
8V9L|1|A|G|2637

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15