HL_8V9L_088

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

8V9L|1|a|U|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_088 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1703

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8V9L|1|a|G|597
8V9L|1|a|C|598
8V9L|1|a|U|599
8V9L|1|a|U|600
8V9L|1|a|A|601
8V9L|1|a|A|602
8V9L|1|a|C|603

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16